triSurfaceTools.C

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  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
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    Copyright (C) 2011-2016 OpenFOAM Foundation
    Copyright (C) 2016-2020 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "triSurfaceTools.H"
 
#include "triSurface.H"
#include "MeshedSurface.H"
#include "OFstream.H"
#include "mergePoints.H"
#include "polyMesh.H"
#include "plane.H"
#include "geompack.H"
 
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
const Foam::label Foam::triSurfaceTools::ANYEDGE = -1;
const Foam::label Foam::triSurfaceTools::NOEDGE = -2;
const Foam::label Foam::triSurfaceTools::COLLAPSED = -3;
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
/*
    Refine by splitting all three edges of triangle ('red' refinement).
    Neighbouring triangles (which are not marked for refinement get split
    in half ('green') refinement. (R. Verfuerth, "A review of a posteriori
    error estimation and adaptive mesh refinement techniques",
    Wiley-Teubner, 1996)
*/
 
// Facei gets refined ('red'). Propagate edge refinement.
void Foam::triSurfaceTools::calcRefineStatus
(
    const triSurface& surf,
    const label facei,
    List<refineType>& refine
)
{
    if (refine[facei] == RED)
    {
        // Already marked for refinement. Do nothing.
    }
    else
    {
        // Not marked or marked for 'green' refinement. Refine.
        refine[facei] = RED;
 
        const labelList& myNeighbours = surf.faceFaces()[facei];
 
        for (const label neighbourFacei : myNeighbours)
        {
            if (refine[neighbourFacei] == GREEN)
            {
                // Change to red refinement and propagate
                calcRefineStatus(surf, neighbourFacei, refine);
            }
            else if (refine[neighbourFacei] == NONE)
            {
                refine[neighbourFacei] = GREEN;
            }
        }
    }
}
 
 
// Split facei along edgeI at position newPointi
void Foam::triSurfaceTools::greenRefine
(
    const triSurface& surf,
    const label facei,
    const label edgeI,
    const label newPointi,
    DynamicList<labelledTri>& newFaces
)
{
    const labelledTri& f = surf.localFaces()[facei];
    const edge& e = surf.edges()[edgeI];
 
    // Find index of edge in face.
 
    label fp0 = f.find(e[0]);
    label fp1 = f.fcIndex(fp0);
    label fp2 = f.fcIndex(fp1);
 
    if (f[fp1] == e[1])
    {
        // Edge oriented like face
        newFaces.append
        (
            labelledTri
            (
                f[fp0],
                newPointi,
                f[fp2],
                f.region()
            )
        );
        newFaces.append
        (
            labelledTri
            (
                newPointi,
                f[fp1],
                f[fp2],
                f.region()
            )
        );
    }
    else
    {
        newFaces.append
        (
            labelledTri
            (
                f[fp2],
                newPointi,
                f[fp1],
                f.region()
            )
        );
        newFaces.append
        (
            labelledTri
            (
                newPointi,
                f[fp0],
                f[fp1],
                f.region()
            )
        );
    }
}
 
 
// Refine all triangles marked for refinement.
Foam::triSurface Foam::triSurfaceTools::doRefine
(
    const triSurface& surf,
    const List<refineType>& refineStatus
)
{
    // Storage for new points. (start after old points)
    label newVertI = surf.nPoints();
 
    DynamicList<point> newPoints(newVertI);
    newPoints.append(surf.localPoints());
 
    // Storage for new faces
    DynamicList<labelledTri> newFaces(surf.size());
 
 
    // Point index for midpoint on edge
    labelList edgeMid(surf.nEdges(), -1);
 
    forAll(refineStatus, facei)
    {
        if (refineStatus[facei] == RED)
        {
            // Create new vertices on all edges to be refined.
            const labelList& fEdges = surf.faceEdges()[facei];
 
            for (const label edgei : fEdges)
            {
                if (edgeMid[edgei] == -1)
                {
                    const edge& e = surf.edges()[edgei];
 
                    // Create new point on mid of edge
                    newPoints.append(e.centre(surf.localPoints()));
                    edgeMid[edgei] = newVertI++;
                }
            }
 
            // Now we have new mid edge vertices for all edges on face
            // so create triangles for RED refinement.
 
            const edgeList& edges = surf.edges();
 
            // Corner triangles
            newFaces.append
            (
                labelledTri
                (
                    edgeMid[fEdges[0]],
                    edges[fEdges[0]].commonVertex(edges[fEdges[1]]),
                    edgeMid[fEdges[1]],
                    surf[facei].region()
                )
            );
 
            newFaces.append
            (
                labelledTri
                (
                    edgeMid[fEdges[1]],
                    edges[fEdges[1]].commonVertex(edges[fEdges[2]]),
                    edgeMid[fEdges[2]],
                    surf[facei].region()
                )
            );
 
            newFaces.append
            (
                labelledTri
                (
                    edgeMid[fEdges[2]],
                    edges[fEdges[2]].commonVertex(edges[fEdges[0]]),
                    edgeMid[fEdges[0]],
                    surf[facei].region()
                )
            );
 
            // Inner triangle
            newFaces.append
            (
                labelledTri
                (
                    edgeMid[fEdges[0]],
                    edgeMid[fEdges[1]],
                    edgeMid[fEdges[2]],
                    surf[facei].region()
                )
            );
 
 
            // Create triangles for GREEN refinement.
            for (const label edgei : fEdges)
            {
                label otherFacei = otherFace(surf, facei, edgei);
 
                if ((otherFacei != -1) && (refineStatus[otherFacei] == GREEN))
                {
                    greenRefine
                    (
                        surf,
                        otherFacei,
                        edgei,
                        edgeMid[edgei],
                        newFaces
                    );
                }
            }
        }
    }
 
    // Copy unmarked triangles since keep original vertex numbering.
    forAll(refineStatus, facei)
    {
        if (refineStatus[facei] == NONE)
        {
            newFaces.append(surf.localFaces()[facei]);
        }
    }
 
    newFaces.shrink();
    newPoints.shrink();
 
 
    // Transfer DynamicLists to straight ones.
    pointField allPoints;
    allPoints.transfer(newPoints);
    newPoints.clear();
 
    return triSurface(newFaces, surf.patches(), allPoints, true);
}
 
 
// Angle between two neighbouring triangles,
// angle between shared-edge end points and left and right face end points
Foam::scalar Foam::triSurfaceTools::faceCosAngle
(
    const point& pStart,
    const point& pEnd,
    const point& pLeft,
    const point& pRight
)
{
    const vector common(pEnd - pStart);
    const vector base0(pLeft - pStart);
    const vector base1(pRight - pStart);
 
    const vector n0 = normalised(common ^ base0);
    const vector n1 = normalised(base1 ^ common);
 
    return n0 & n1;
}
 
 
// Protect edges around vertex from collapsing.
// Moving vertI to a different position
// - affects obviously the cost of the faces using it
// - but also their neighbours since the edge between the faces changes
void Foam::triSurfaceTools::protectNeighbours
(
    const triSurface& surf,
    const label vertI,
    labelList& faceStatus
)
{
//    for (const label facei : surf.pointFaces()[vertI])
//    {
//        if ((faceStatus[facei] == ANYEDGE) || (faceStatus[facei] >= 0))
//        {
//            faceStatus[facei] = NOEDGE;
//        }
//    }
 
    for (const label edgei : surf.pointEdges()[vertI])
    {
        for (const label facei : surf.edgeFaces()[edgei])
        {
            if ((faceStatus[facei] == ANYEDGE) || (faceStatus[facei] >= 0))
            {
                faceStatus[facei] = NOEDGE;
            }
       }
    }
}
 
 
//
// Edge collapse helper functions
//
 
// Get all faces that will get collapsed if edgeI collapses.
Foam::labelHashSet Foam::triSurfaceTools::getCollapsedFaces
(
    const triSurface& surf,
    label edgeI
)
{
    const edge& e = surf.edges()[edgeI];
    const label v1 = e.start();
    const label v2 = e.end();
 
    // Faces using edge will certainly get collapsed.
    const labelList& myFaces = surf.edgeFaces()[edgeI];
 
    labelHashSet facesToBeCollapsed(2*myFaces.size());
    facesToBeCollapsed.insert(myFaces);
 
    // From faces using v1 check if they share an edge with faces
    // using v2.
    //  - share edge: are part of 'splay' tree and will collapse if edge
    //    collapses
    const labelList& v1Faces = surf.pointFaces()[v1];
 
    for (const label face1I : v1Faces)
    {
        label otherEdgeI = oppositeEdge(surf, face1I, v1);
 
        // Step across edge to other face
        label face2I = otherFace(surf, face1I, otherEdgeI);
 
        if (face2I != -1)
        {
            // found face on other side of edge. Now check if uses v2.
            if (oppositeVertex(surf, face2I, otherEdgeI) == v2)
            {
                // triangles face1I and face2I form splay tree and will
                // collapse.
                facesToBeCollapsed.insert(face1I);
                facesToBeCollapsed.insert(face2I);
            }
        }
    }
 
    return facesToBeCollapsed;
}
 
 
// Return value of faceUsed for faces using vertI
Foam::label Foam::triSurfaceTools::vertexUsesFace
(
    const triSurface& surf,
    const labelHashSet& faceUsed,
    const label vertI
)
{
    for (const label face1I : surf.pointFaces()[vertI])
    {
        if (faceUsed.found(face1I))
        {
            return face1I;
        }
    }
    return -1;
}
 
 
// Calculate new edge-face addressing resulting from edge collapse
void Foam::triSurfaceTools::getMergedEdges
(
    const triSurface& surf,
    const label edgeI,
    const labelHashSet& collapsedFaces,
    Map<label>& edgeToEdge,
    Map<label>& edgeToFace
)
{
    const edge& e = surf.edges()[edgeI];
    const label v1 = e.start();
    const label v2 = e.end();
 
    const labelList& v1Faces = surf.pointFaces()[v1];
    const labelList& v2Faces = surf.pointFaces()[v2];
 
    // Mark all (non collapsed) faces using v2
    labelHashSet v2FacesHash(v2Faces.size());
 
    for (const label facei : v2Faces)
    {
        if (!collapsedFaces.found(facei))
        {
            v2FacesHash.insert(facei);
        }
    }
 
 
    for (const label face1I: v1Faces)
    {
        if (collapsedFaces.found(face1I))
        {
            continue;
        }
 
        //
        // Check if face1I uses a vertex connected to a face using v2
        //
 
        label vert1I = -1;
        label vert2I = -1;
        otherVertices
        (
            surf,
            face1I,
            v1,
            vert1I,
            vert2I
        );
        //Pout<< "Face:" << surf.localFaces()[face1I] << " other vertices:"
        //    << vert1I << ' ' << vert2I << endl;
 
        // Check vert1, vert2 for usage by v2Face.
 
        label commonVert = vert1I;
        label face2I = vertexUsesFace(surf, v2FacesHash, commonVert);
        if (face2I == -1)
        {
            commonVert = vert2I;
            face2I = vertexUsesFace(surf, v2FacesHash, commonVert);
        }
 
        if (face2I != -1)
        {
            // Found one: commonVert is used by both face1I and face2I
            label edge1I = getEdge(surf, v1, commonVert);
            label edge2I = getEdge(surf, v2, commonVert);
 
            edgeToEdge.insert(edge1I, edge2I);
            edgeToEdge.insert(edge2I, edge1I);
 
            edgeToFace.insert(edge1I, face2I);
            edgeToFace.insert(edge2I, face1I);
        }
    }
}
 
 
// Calculates (cos of) angle across edgeI of facei,
// taking into account updated addressing (resulting from edge collapse)
Foam::scalar Foam::triSurfaceTools::edgeCosAngle
(
    const triSurface& surf,
    const label v1,
    const point& pt,
    const labelHashSet& collapsedFaces,
    const Map<label>& edgeToEdge,
    const Map<label>& edgeToFace,
    const label facei,
    const label edgeI
)
{
    const pointField& localPoints = surf.localPoints();
 
    label A = surf.edges()[edgeI].start();
    label B = surf.edges()[edgeI].end();
    label C = oppositeVertex(surf, facei, edgeI);
 
    label D = -1;
 
    label face2I = -1;
 
    if (edgeToEdge.found(edgeI))
    {
        // Use merged addressing
        label edge2I = edgeToEdge[edgeI];
        face2I = edgeToFace[edgeI];
 
        D = oppositeVertex(surf, face2I, edge2I);
    }
    else
    {
        // Use normal edge-face addressing
        face2I = otherFace(surf, facei, edgeI);
 
        if ((face2I != -1) && !collapsedFaces.found(face2I))
        {
            D = oppositeVertex(surf, face2I, edgeI);
        }
    }
 
    scalar cosAngle = 1;
 
    if (D != -1)
    {
        if (A == v1)
        {
            cosAngle = faceCosAngle
            (
                pt,
                localPoints[B],
                localPoints[C],
                localPoints[D]
            );
        }
        else if (B == v1)
        {
            cosAngle = faceCosAngle
            (
                localPoints[A],
                pt,
                localPoints[C],
                localPoints[D]
            );
        }
        else if (C == v1)
        {
            cosAngle = faceCosAngle
            (
                localPoints[A],
                localPoints[B],
                pt,
                localPoints[D]
            );
        }
        else if (D == v1)
        {
            cosAngle = faceCosAngle
            (
                localPoints[A],
                localPoints[B],
                localPoints[C],
                pt
            );
        }
        else
        {
            FatalErrorInFunction
                << "face " << facei << " does not use vertex "
                << v1 << " of collapsed edge" << abort(FatalError);
        }
    }
    return cosAngle;
}
 
 
Foam::scalar Foam::triSurfaceTools::collapseMinCosAngle
(
    const triSurface& surf,
    const label v1,
    const point& pt,
    const labelHashSet& collapsedFaces,
    const Map<label>& edgeToEdge,
    const Map<label>& edgeToFace
)
{
    const labelList& v1Faces = surf.pointFaces()[v1];
 
    scalar minCos = 1;
 
    for (const label facei : v1Faces)
    {
        if (collapsedFaces.found(facei))
        {
            continue;
        }
 
        for (const label edgeI : surf.faceEdges()[facei])
        {
            minCos =
                min
                (
                    minCos,
                    edgeCosAngle
                    (
                        surf,
                        v1,
                        pt,
                        collapsedFaces,
                        edgeToEdge,
                        edgeToFace,
                        facei,
                        edgeI
                    )
                );
        }
    }
 
    return minCos;
}
 
 
// Calculate max dihedral angle after collapsing edge to v1 (at pt).
// Note that all edges of all faces using v1 are affected.
bool Foam::triSurfaceTools::collapseCreatesFold
(
    const triSurface& surf,
    const label v1,
    const point& pt,
    const labelHashSet& collapsedFaces,
    const Map<label>& edgeToEdge,
    const Map<label>& edgeToFace,
    const scalar minCos
)
{
    const labelList& v1Faces = surf.pointFaces()[v1];
 
    for (const label facei : v1Faces)
    {
        if (collapsedFaces.found(facei))
        {
            continue;
        }
 
        const labelList& myEdges = surf.faceEdges()[facei];
 
        for (const label edgeI : myEdges)
        {
            if
            (
                edgeCosAngle
                (
                    surf,
                    v1,
                    pt,
                    collapsedFaces,
                    edgeToEdge,
                    edgeToFace,
                    facei,
                    edgeI
                )
              < minCos
            )
            {
                return true;
            }
        }
    }
 
    return false;
}
 
 
// a vertex.
//bool Foam::triSurfaceTools::collapseCreatesDuplicates
//(
//    const triSurface& surf,
//    const label edgeI,
//    const labelHashSet& collapsedFaces
//)
//{
//Pout<< "duplicate : edgeI:" << edgeI << surf.edges()[edgeI]
//    << " collapsedFaces:" << collapsedFaces.toc() << endl;
//
//    // Mark neighbours of faces to be collapsed, i.e. get the first layer
//    // of triangles outside collapsedFaces.
//    // neighbours actually contains the
//    // edge with which triangle connects to collapsedFaces.
//
//    Map<label> neighbours;
//
//    labelList collapsed = collapsedFaces.toc();
//
//    for (const label facei : collapsed)
//    {
//        const labelList& myEdges = surf.faceEdges()[facei];
//
//        Pout<< "collapsing facei:" << facei << " uses edges:" << myEdges
//            << endl;
//
//        forAll(myEdges, myEdgeI)
//        {
//            const labelList& myFaces = surf.edgeFaces()[myEdges[myEdgeI]];
//
//            Pout<< "Edge " << myEdges[myEdgeI] << " is used by faces "
//                << myFaces << endl;
//
//            if ((myEdges[myEdgeI] != edgeI) && (myFaces.size() == 2))
//            {
//                // Get the other face
//                label neighbourFacei = myFaces[0];
//
//                if (neighbourFacei == facei)
//                {
//                    neighbourFacei = myFaces[1];
//                }
//
//                // Is 'outside' face if not in collapsedFaces itself
//                if (!collapsedFaces.found(neighbourFacei))
//                {
//                    neighbours.insert(neighbourFacei, myEdges[myEdgeI]);
//                }
//            }
//        }
//    }
//
//    // Now neighbours contains first layer of triangles outside of
//    // collapseFaces
//    // There should be
//    // -two if edgeI is a boundary edge
//    // since the outside 'edge' of collapseFaces should
//    // form a triangle and the face connected to edgeI is not inserted.
//    // -four if edgeI is not a boundary edge since then the outside edge forms
//    // a diamond.
//
//    // Check if any of the faces in neighbours share an edge. (n^2)
//
//    labelList neighbourList = neighbours.toc();
//
//Pout<< "edgeI:" << edgeI << "  neighbourList:" << neighbourList << endl;
//
//
//    forAll(neighbourList, i)
//    {
//        const labelList& faceIEdges = surf.faceEdges()[neighbourList[i]];
//
//        for (label j = i+1; j < neighbourList.size(); i++)
//        {
//            const labelList& faceJEdges = surf.faceEdges()[neighbourList[j]];
//
//            // Check if facei and faceJ share an edge
//            forAll(faceIEdges, fI)
//            {
//                forAll(faceJEdges, fJ)
//                {
//                    Pout<< " comparing " << faceIEdges[fI] << " to "
//                        << faceJEdges[fJ] << endl;
//
//                    if (faceIEdges[fI] == faceJEdges[fJ])
//                    {
//                        return true;
//                    }
//                }
//            }
//        }
//    }
//    Pout<< "Found no match. Returning false" << endl;
//    return false;
//}
 
 
// Finds the triangle edge cut by the plane between a point inside / on edge
// of a triangle and a point outside. Returns:
//  - cut through edge/point
//  - miss()
Foam::surfaceLocation Foam::triSurfaceTools::cutEdge
(
    const triSurface& s,
    const label triI,
    const label excludeEdgeI,
    const label excludePointi,
 
    const point& triPoint,
    const plane& cutPlane,
    const point& toPoint
)
{
    const pointField& points = s.points();
    const labelledTri& f = s[triI];
    const labelList& fEdges = s.faceEdges()[triI];
 
    // Get normal distance to planeN
    FixedList<scalar, 3> d;
 
    scalar norm = 0;
    forAll(d, fp)
    {
        d[fp] = cutPlane.signedDistance(points[f[fp]]);
        norm += mag(d[fp]);
    }
 
    // Normalise and truncate
    forAll(d, i)
    {
        d[i] /= norm;
 
        if (mag(d[i]) < 1e-6)
        {
            d[i] = 0.0;
        }
    }
 
    // Return information
    surfaceLocation cut;
 
    if (excludePointi != -1)
    {
        // Excluded point. Test only opposite edge.
 
        label fp0 = s.localFaces()[triI].find(excludePointi);
 
        if (fp0 == -1)
        {
            FatalErrorInFunction
                << " localF:" << s.localFaces()[triI] << abort(FatalError);
        }
 
        label fp1 = f.fcIndex(fp0);
        label fp2 = f.fcIndex(fp1);
 
 
        if (d[fp1] == 0.0)
        {
            cut.setHit();
            cut.setPoint(points[f[fp1]]);
            cut.elementType() = triPointRef::POINT;
            cut.setIndex(s.localFaces()[triI][fp1]);
        }
        else if (d[fp2] == 0.0)
        {
            cut.setHit();
            cut.setPoint(points[f[fp2]]);
            cut.elementType() = triPointRef::POINT;
            cut.setIndex(s.localFaces()[triI][fp2]);
        }
        else if
        (
            (d[fp1] < 0 && d[fp2] < 0)
         || (d[fp1] > 0 && d[fp2] > 0)
        )
        {
            // Both same sign. Not crossing edge at all.
            // cut already set to miss().
        }
        else
        {
            cut.setHit();
            cut.setPoint
            (
                (d[fp2]*points[f[fp1]] - d[fp1]*points[f[fp2]])
              / (d[fp2] - d[fp1])
            );
            cut.elementType() = triPointRef::EDGE;
            cut.setIndex(fEdges[fp1]);
        }
    }
    else
    {
        // Find the two intersections
        FixedList<surfaceLocation, 2> inters;
        label interI = 0;
 
        forAll(f, fp0)
        {
            label fp1 = f.fcIndex(fp0);
 
            if (d[fp0] == 0)
            {
                if (interI >= 2)
                {
                    FatalErrorInFunction
                        << "problem : triangle has three intersections." << nl
                        << "triangle:" << f.tri(points)
                        << " d:" << d << abort(FatalError);
                }
                inters[interI].setHit();
                inters[interI].setPoint(points[f[fp0]]);
                inters[interI].elementType() = triPointRef::POINT;
                inters[interI].setIndex(s.localFaces()[triI][fp0]);
                interI++;
            }
            else if
            (
                (d[fp0] < 0 && d[fp1] > 0)
             || (d[fp0] > 0 && d[fp1] < 0)
            )
            {
                if (interI >= 2)
                {
                    FatalErrorInFunction
                        << "problem : triangle has three intersections." << nl
                        << "triangle:" << f.tri(points)
                        << " d:" << d << abort(FatalError);
                }
                inters[interI].setHit();
                inters[interI].setPoint
                (
                    (d[fp0]*points[f[fp1]] - d[fp1]*points[f[fp0]])
                  / (d[fp0] - d[fp1])
                );
                inters[interI].elementType() = triPointRef::EDGE;
                inters[interI].setIndex(fEdges[fp0]);
                interI++;
            }
        }
 
 
        if (interI == 0)
        {
            // Return miss
        }
        else if (interI == 1)
        {
            // Only one intersection. Should not happen!
            cut = inters[0];
        }
        else if (interI == 2)
        {
            // Handle excludeEdgeI
            if
            (
                inters[0].elementType() == triPointRef::EDGE
             && inters[0].index() == excludeEdgeI
            )
            {
                cut = inters[1];
            }
            else if
            (
                inters[1].elementType() == triPointRef::EDGE
             && inters[1].index() == excludeEdgeI
            )
            {
                cut = inters[0];
            }
            else
            {
                // Two cuts. Find nearest.
                if
                (
                    magSqr(inters[0].rawPoint() - toPoint)
                  < magSqr(inters[1].rawPoint() - toPoint)
                )
                {
                    cut = inters[0];
                }
                else
                {
                    cut = inters[1];
                }
            }
        }
    }
    return cut;
}
 
 
// 'Snap' point on to endPoint.
void Foam::triSurfaceTools::snapToEnd
(
    const triSurface& s,
    const surfaceLocation& end,
    surfaceLocation& current
)
{
    if (end.elementType() == triPointRef::NONE)
    {
        if (current.elementType() == triPointRef::NONE)
        {
            // endpoint on triangle; current on triangle
            if (current.index() == end.index())
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
        // No need to handle current on edge/point since tracking handles this.
    }
    else if (end.elementType() == triPointRef::EDGE)
    {
        if (current.elementType() == triPointRef::NONE)
        {
            // endpoint on edge; current on triangle
            const labelList& fEdges = s.faceEdges()[current.index()];
 
            if (fEdges.found(end.index()))
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
        else if (current.elementType() == triPointRef::EDGE)
        {
            // endpoint on edge; current on edge
            if (current.index() == end.index())
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
        else
        {
            // endpoint on edge; current on point
            const edge& e = s.edges()[end.index()];
 
            if (current.index() == e[0] || current.index() == e[1])
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
    }
    else    // end.elementType() == POINT
    {
        if (current.elementType() == triPointRef::NONE)
        {
            // endpoint on point; current on triangle
            const triSurface::face_type& f = s.localFaces()[current.index()];
 
            if (f.found(end.index()))
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
        else if (current.elementType() == triPointRef::EDGE)
        {
            // endpoint on point; current on edge
            const edge& e = s.edges()[current.index()];
 
            if (end.index() == e[0] || end.index() == e[1])
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
        else
        {
            // endpoint on point; current on point
            if (current.index() == end.index())
            {
                //if (debug)
                //{
                //    Pout<< "snapToEnd : snapping:" << current << " onto:"
                //        << end << endl;
                //}
                current = end;
                current.setHit();
            }
        }
    }
}
 
 
// Start:
//  - location
//  - element type (triangle/edge/point) and index
//  - triangle to exclude
Foam::surfaceLocation Foam::triSurfaceTools::visitFaces
(
    const triSurface& s,
    const labelList& eFaces,
    const surfaceLocation& start,
    const label excludeEdgeI,
    const label excludePointi,
    const surfaceLocation& end,
    const plane& cutPlane
)
{
    surfaceLocation nearest;
 
    scalar minDistSqr = Foam::sqr(GREAT);
 
    for (const label triI : eFaces)
    {
        // Make sure we don't revisit previous face
        if (triI != start.triangle())
        {
            if (end.elementType() == triPointRef::NONE && end.index() == triI)
            {
                // Endpoint is in this triangle. Jump there.
                nearest = end;
                nearest.setHit();
                nearest.triangle() = triI;
                break;
            }
            else
            {
               // Which edge is cut.
 
                surfaceLocation cutInfo = cutEdge
                (
                    s,
                    triI,
                    excludeEdgeI,       // excludeEdgeI
                    excludePointi,      // excludePointi
                    start.rawPoint(),
                    cutPlane,
                    end.rawPoint()
                );
 
                // If crossing an edge we expect next edge to be cut.
                if (excludeEdgeI != -1 && !cutInfo.hit())
                {
                    FatalErrorInFunction
                        << "Triangle:" << triI
                        << " excludeEdge:" << excludeEdgeI
                        << " point:" << start.rawPoint()
                        << " plane:" << cutPlane
                        << " . No intersection!" << abort(FatalError);
                }
 
                if (cutInfo.hit())
                {
                    scalar distSqr = magSqr(cutInfo.rawPoint()-end.rawPoint());
 
                    if (distSqr < minDistSqr)
                    {
                        minDistSqr = distSqr;
                        nearest = cutInfo;
                        nearest.triangle() = triI;
                        nearest.setMiss();
                    }
                }
            }
        }
    }
 
    if (nearest.triangle() == -1)
    {
        // Did not move from edge. Give warning? Return something special?
        // For now responsibility of caller to make sure that nothing has
        // moved.
    }
 
    return nearest;
}
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 
// Write pointField to file
void Foam::triSurfaceTools::writeOBJ
(
    const fileName& fName,
    const pointField& pts
)
{
    OFstream outFile(fName);
 
    for (const point& pt : pts)
    {
        outFile<< "v " << pt.x() << ' ' << pt.y() << ' ' << pt.z() << endl;
    }
    Pout<< "Written " << pts.size() << " vertices to file " << fName << endl;
}
 
 
// Write vertex subset to OBJ format file
void Foam::triSurfaceTools::writeOBJ
(
    const triSurface& surf,
    const fileName& fName,
    const boolList& markedVerts
)
{
    OFstream outFile(fName);
 
    label nVerts = 0;
    forAll(markedVerts, vertI)
    {
        if (markedVerts[vertI])
        {
            const point& pt = surf.localPoints()[vertI];
 
            outFile<< "v " << pt.x() << ' ' << pt.y() << ' ' << pt.z() << endl;
 
            nVerts++;
        }
    }
    Pout<< "Written " << nVerts << " vertices to file " << fName << endl;
}
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Addressing helper functions:
 
 
// Get all triangles using vertices of edge
void Foam::triSurfaceTools::getVertexTriangles
(
    const triSurface& surf,
    const label edgeI,
    labelList& edgeTris
)
{
    const edge& e = surf.edges()[edgeI];
    const labelList& myFaces = surf.edgeFaces()[edgeI];
 
    label face1I = myFaces[0];
    label face2I = -1;
    if (myFaces.size() == 2)
    {
        face2I = myFaces[1];
    }
 
    const labelList& startFaces = surf.pointFaces()[e.start()];
    const labelList& endFaces = surf.pointFaces()[e.end()];
 
    // Number of triangles is sum of pointfaces - common faces
    // (= faces using edge)
    edgeTris.setSize(startFaces.size() + endFaces.size() - myFaces.size());
 
    label nTris = 0;
    for (const label facei : startFaces)
    {
        edgeTris[nTris++] = facei;
    }
 
    for (const label facei : endFaces)
    {
        if ((facei != face1I) && (facei != face2I))
        {
            edgeTris[nTris++] = facei;
        }
    }
}
 
 
// Get all vertices connected to vertices of edge
Foam::labelList Foam::triSurfaceTools::getVertexVertices
(
    const triSurface& surf,
    const edge& e
)
{
    const edgeList& edges = surf.edges();
    const label v1 = e.start();
    const label v2 = e.end();
 
    // Get all vertices connected to v1 or v2 through an edge
    labelHashSet vertexNeighbours;
 
    const labelList& v1Edges = surf.pointEdges()[v1];
 
    for (const label edgei : v1Edges)
    {
        vertexNeighbours.insert(edges[edgei].otherVertex(v1));
    }
 
    const labelList& v2Edges = surf.pointEdges()[v2];
 
    for (const label edgei : v2Edges)
    {
        vertexNeighbours.insert(edges[edgei].otherVertex(v2));
    }
    return vertexNeighbours.toc();
}
 
 
// Get the other face using edgeI
Foam::label Foam::triSurfaceTools::otherFace
(
    const triSurface& surf,
    const label facei,
    const label edgeI
)
{
    const labelList& myFaces = surf.edgeFaces()[edgeI];
 
    if (myFaces.size() != 2)
    {
        return -1;
    }
    else if (facei == myFaces[0])
    {
        return myFaces[1];
    }
    else
    {
        return myFaces[0];
    }
}
 
 
// Get the two edges on facei counterclockwise after edgeI
void Foam::triSurfaceTools::otherEdges
(
    const triSurface& surf,
    const label facei,
    const label edgeI,
    label& e1,
    label& e2
)
{
    const labelList& eFaces = surf.faceEdges()[facei];
 
    label i0 = eFaces.find(edgeI);
 
    if (i0 == -1)
    {
        FatalErrorInFunction
            << "Edge " << surf.edges()[edgeI] << " not in face "
            << surf.localFaces()[facei] << abort(FatalError);
    }
 
    label i1 = eFaces.fcIndex(i0);
    label i2 = eFaces.fcIndex(i1);
 
    e1 = eFaces[i1];
    e2 = eFaces[i2];
}
 
 
// Get the two vertices on facei counterclockwise vertI
void Foam::triSurfaceTools::otherVertices
(
    const triSurface& surf,
    const label facei,
    const label vertI,
    label& vert1I,
    label& vert2I
)
{
    const labelledTri& f = surf.localFaces()[facei];
 
    if (vertI == f[0])
    {
        vert1I = f[1];
        vert2I = f[2];
    }
    else if (vertI == f[1])
    {
        vert1I = f[2];
        vert2I = f[0];
    }
    else if (vertI == f[2])
    {
        vert1I = f[0];
        vert2I = f[1];
    }
    else
    {
        FatalErrorInFunction
            << "Vertex " << vertI << " not in face " << f << nl
            << abort(FatalError);
    }
}
 
 
// Get edge opposite vertex
Foam::label Foam::triSurfaceTools::oppositeEdge
(
    const triSurface& surf,
    const label facei,
    const label vertI
)
{
    const labelList& myEdges = surf.faceEdges()[facei];
 
    for (const label edgei : myEdges)
    {
        const edge& e = surf.edges()[edgei];
 
        if (!e.found(vertI))
        {
            return edgei;
        }
    }
 
    FatalErrorInFunction
        << "Cannot find vertex " << vertI << " in edges of face " << facei
        << nl
        << abort(FatalError);
 
    return -1;
}
 
 
// Get vertex opposite edge
Foam::label Foam::triSurfaceTools::oppositeVertex
(
    const triSurface& surf,
    const label facei,
    const label edgeI
)
{
    const triSurface::face_type& f = surf.localFaces()[facei];
    const edge& e = surf.edges()[edgeI];
 
    for (const label pointi : f)
    {
        if (!e.found(pointi))
        {
            return pointi;
        }
    }
 
    FatalErrorInFunction
        << "Cannot find vertex opposite edge " << edgeI << " vertices " << e
        << " in face " << facei << " vertices " << f << abort(FatalError);
 
    return -1;
}
 
 
// Returns edge label connecting v1, v2
Foam::label Foam::triSurfaceTools::getEdge
(
    const triSurface& surf,
    const label v1,
    const label v2
)
{
    const labelList& v1Edges = surf.pointEdges()[v1];
 
    for (const label edgei : v1Edges)
    {
        const edge& e = surf.edges()[edgei];
 
        if (e.found(v2))
        {
            return edgei;
        }
    }
    return -1;
}
 
 
// Return index of triangle (or -1) using all three edges
Foam::label Foam::triSurfaceTools::getTriangle
(
    const triSurface& surf,
    const label e0I,
    const label e1I,
    const label e2I
)
{
    if ((e0I == e1I) || (e0I == e2I) || (e1I == e2I))
    {
        FatalErrorInFunction
            << "Duplicate edge labels : e0:" << e0I << " e1:" << e1I
            << " e2:" << e2I
            << abort(FatalError);
    }
 
    const labelList& eFaces = surf.edgeFaces()[e0I];
 
    for (const label facei : eFaces)
    {
        const labelList& myEdges = surf.faceEdges()[facei];
 
        if
        (
            (myEdges[0] == e1I)
         || (myEdges[1] == e1I)
         || (myEdges[2] == e1I)
        )
        {
            if
            (
                (myEdges[0] == e2I)
             || (myEdges[1] == e2I)
             || (myEdges[2] == e2I)
            )
            {
                return facei;
            }
        }
    }
    return -1;
}
 
 
// Collapse indicated edges. Return new tri surface.
Foam::triSurface Foam::triSurfaceTools::collapseEdges
(
    const triSurface& surf,
    const labelList& collapsableEdges
)
{
    pointField edgeMids(surf.nEdges());
 
    forAll(edgeMids, edgeI)
    {
        const edge& e = surf.edges()[edgeI];
        edgeMids[edgeI] = e.centre(surf.localPoints());
    }
 
 
    labelList faceStatus(surf.size(), ANYEDGE);
 
    //forAll(edges, edgeI)
    //{
    //    const labelList& neighbours = edgeFaces[edgeI];
    //
    //    if ((neighbours.size() != 2) && (neighbours.size() != 1))
    //    {
    //        FatalErrorInFunction
    //            << abort(FatalError);
    //    }
    //
    //    if (neighbours.size() == 2)
    //    {
    //        if (surf[neighbours[0]].region() != surf[neighbours[1]].region())
    //        {
    //            // Neighbours on different regions. For now, do not allow
    //            // any collapse.
    //            //Pout<< "protecting face " << neighbours[0]
    //            //    << ' ' << neighbours[1] << endl;
    //            faceStatus[neighbours[0]] = NOEDGE;
    //            faceStatus[neighbours[1]] = NOEDGE;
    //        }
    //    }
    //}
 
    return collapseEdges(surf, collapsableEdges, edgeMids, faceStatus);
}
 
 
// Collapse indicated edges. Return new tri surface.
Foam::triSurface Foam::triSurfaceTools::collapseEdges
(
    const triSurface& surf,
    const labelList& collapseEdgeLabels,
    const pointField& edgeMids,
    labelList& faceStatus
)
{
    const labelListList& edgeFaces = surf.edgeFaces();
    const pointField& localPoints = surf.localPoints();
    const edgeList& edges = surf.edges();
 
    // Storage for new points
    pointField newPoints(localPoints);
 
    // Map for old to new points
    labelList pointMap(localPoints.size());
    forAll(localPoints, pointi)
    {
        pointMap[pointi] = pointi;
    }
 
 
    // Do actual 'collapsing' of edges
 
    for (const label edgei : collapseEdgeLabels)
    {
        if (edgei < 0 || edgei >= surf.nEdges())
        {
            FatalErrorInFunction
                << "Edge label outside valid range." << endl
                << "edge label:" << edgei << endl
                << "total number of edges:" << surf.nEdges() << endl
                << abort(FatalError);
        }
 
        const labelList& neighbours = edgeFaces[edgei];
 
        if (neighbours.size() == 2)
        {
            const label stat0 = faceStatus[neighbours[0]];
            const label stat1 = faceStatus[neighbours[1]];
 
            // Check faceStatus to make sure this one can be collapsed
            if
            (
                ((stat0 == ANYEDGE) || (stat0 == edgei))
             && ((stat1 == ANYEDGE) || (stat1 == edgei))
            )
            {
                const edge& e = edges[edgei];
 
                // Set up mapping to 'collapse' points of edge
                if
                (
                    (pointMap[e.start()] != e.start())
                 || (pointMap[e.end()] != e.end())
                )
                {
                    FatalErrorInFunction
                        << "points already mapped. Double collapse." << endl
                        << "edgei:" << edgei
                        << "  start:" << e.start()
                        << "  end:" << e.end()
                        << "  pointMap[start]:" << pointMap[e.start()]
                        << "  pointMap[end]:" << pointMap[e.end()]
                        << abort(FatalError);
                }
 
                const label minVert = min(e.start(), e.end());
                pointMap[e.start()] = minVert;
                pointMap[e.end()] = minVert;
 
                // Move shared vertex to mid of edge
                newPoints[minVert] = edgeMids[edgei];
 
                // Protect neighbouring faces
                protectNeighbours(surf, e.start(), faceStatus);
                protectNeighbours(surf, e.end(), faceStatus);
                protectNeighbours
                (
                    surf,
                    oppositeVertex(surf, neighbours[0], edgei),
                    faceStatus
                );
                protectNeighbours
                (
                    surf,
                    oppositeVertex(surf, neighbours[1], edgei),
                    faceStatus
                );
 
                // Mark all collapsing faces
                labelList collapseFaces =
                    getCollapsedFaces
                    (
                        surf,
                        edgei
                    ).toc();
 
                forAll(collapseFaces, collapseI)
                {
                     faceStatus[collapseFaces[collapseI]] = COLLAPSED;
                }
            }
        }
    }
 
 
    // Storage for new triangles
    List<labelledTri> newTris(surf.size());
    label newTriI = 0;
 
    const List<labelledTri>& localFaces = surf.localFaces();
 
 
    // Get only non-collapsed triangles and renumber vertex labels.
    forAll(localFaces, facei)
    {
        const labelledTri& f = localFaces[facei];
 
        const label a = pointMap[f[0]];
        const label b = pointMap[f[1]];
        const label c = pointMap[f[2]];
 
        if
        (
            (a != b) && (a != c) && (b != c)
         && (faceStatus[facei] != COLLAPSED)
        )
        {
            // uncollapsed triangle
            newTris[newTriI++] = labelledTri(a, b, c, f.region());
        }
        else
        {
            //Pout<< "Collapsed triangle " << facei
            //    << " vertices:" << f << endl;
        }
    }
    newTris.setSize(newTriI);
 
 
 
    // Pack faces
 
    triSurface tempSurf(newTris, surf.patches(), newPoints);
 
    return
        triSurface
        (
            tempSurf.localFaces(),
            tempSurf.patches(),
            tempSurf.localPoints()
        );
}
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
Foam::triSurface Foam::triSurfaceTools::redGreenRefine
(
    const triSurface& surf,
    const labelList& refineFaces
)
{
    List<refineType> refineStatus(surf.size(), NONE);
 
    // Mark & propagate refinement
    forAll(refineFaces, refineFacei)
    {
        calcRefineStatus(surf, refineFaces[refineFacei], refineStatus);
    }
 
    // Do actual refinement
    return doRefine(surf, refineStatus);
}
 
 
Foam::triSurface Foam::triSurfaceTools::greenRefine
(
    const triSurface& surf,
    const labelList& refineEdges
)
{
    // Storage for marking faces
    List<refineType> refineStatus(surf.size(), NONE);
 
    // Storage for new faces
    DynamicList<labelledTri> newFaces(0);
 
    pointField newPoints(surf.localPoints());
    newPoints.setSize(surf.nPoints() + surf.nEdges());
    label newPointi = surf.nPoints();
 
 
    // Refine edges
    for (const label edgei : refineEdges)
    {
        const labelList& myFaces = surf.edgeFaces()[edgei];
 
        bool neighbourIsRefined= false;
 
        for (const label facei : myFaces)
        {
            if (refineStatus[facei] != NONE)
            {
                neighbourIsRefined =  true;
            }
        }
 
        // Only refine if none of the faces is refined
        if (!neighbourIsRefined)
        {
            // Refine edge
            const edge& e = surf.edges()[edgei];
 
            newPoints[newPointi] = e.centre(surf.localPoints());
 
            // Refine faces using edge
            for (const label facei : myFaces)
            {
                // Add faces to newFaces
                greenRefine
                (
                    surf,
                    facei,
                    edgei,
                    newPointi,
                    newFaces
                );
 
                // Mark as refined
                refineStatus[facei] = GREEN;
            }
 
            ++newPointi;
        }
    }
 
    // Add unrefined faces
    forAll(surf.localFaces(), facei)
    {
        if (refineStatus[facei] == NONE)
        {
            newFaces.append(surf.localFaces()[facei]);
        }
    }
 
    newFaces.shrink();
    newPoints.setSize(newPointi);
 
    return triSurface(newFaces, surf.patches(), newPoints, true);
}
 
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Geometric helper functions:
 
 
// Returns element in edgeIndices with minimum length
Foam::label Foam::triSurfaceTools::minEdge
(
    const triSurface& surf,
    const labelList& edgeIndices
)
{
    scalar minLen = GREAT;
    label minEdge = -1;
 
    for (const label edgei : edgeIndices)
    {
        const edge& e = surf.edges()[edgei];
 
        const scalar length = e.mag(surf.localPoints());
 
        if (length < minLen)
        {
            minLen = length;
            minEdge = edgei;
        }
    }
 
    return minEdge;
}
 
 
// Returns element in edgeIndices with maximum length
Foam::label Foam::triSurfaceTools::maxEdge
(
    const triSurface& surf,
    const labelList& edgeIndices
)
{
    scalar maxLen = -GREAT;
    label maxEdge = -1;
 
    for (const label edgei : edgeIndices)
    {
        const edge& e = surf.edges()[edgei];
 
        const scalar length = e.mag(surf.localPoints());
 
        if (length > maxLen)
        {
            maxLen = length;
            maxEdge = edgei;
        }
    }
 
    return maxEdge;
}
 
 
// Merge points and reconstruct surface
Foam::triSurface Foam::triSurfaceTools::mergePoints
(
    const triSurface& surf,
    const scalar mergeTol
)
{
    pointField newPoints(surf.nPoints());
 
    labelList pointMap(surf.nPoints());
 
    bool hasMerged = Foam::mergePoints
    (
        surf.localPoints(),
        mergeTol,
        false,
        pointMap,
        newPoints
    );
 
    if (hasMerged)
    {
        // Pack the triangles
 
        // Storage for new triangles
        List<labelledTri> newTriangles(surf.size());
        label newTriangleI = 0;
 
        forAll(surf, facei)
        {
            const labelledTri& f = surf.localFaces()[facei];
 
            label newA = pointMap[f[0]];
            label newB = pointMap[f[1]];
            label newC = pointMap[f[2]];
 
            if ((newA != newB) && (newA != newC) && (newB != newC))
            {
                newTriangles[newTriangleI++] =
                    labelledTri(newA, newB, newC, f.region());
            }
        }
        newTriangles.setSize(newTriangleI);
 
        return triSurface
        (
            newTriangles,
            surf.patches(),
            newPoints,
            true                //reuse storage
        );
    }
 
    return surf;
}
 
 
// Calculate normal on triangle
Foam::vector Foam::triSurfaceTools::surfaceNormal
(
    const triSurface& surf,
    const label nearestFacei,
    const point& nearestPt
)
{
    const triSurface::face_type& f = surf[nearestFacei];
    const pointField& points = surf.points();
 
    label nearType, nearLabel;
 
    f.nearestPointClassify(nearestPt, points, nearType, nearLabel);
 
    if (nearType == triPointRef::NONE)
    {
        // Nearest to face
        return surf.faceNormals()[nearestFacei];
    }
    else if (nearType == triPointRef::EDGE)
    {
        // Nearest to edge. Assume order of faceEdges same as face vertices.
        label edgeI = surf.faceEdges()[nearestFacei][nearLabel];
 
        // Calculate edge normal by averaging face normals
        const labelList& eFaces = surf.edgeFaces()[edgeI];
 
        vector edgeNormal(Zero);
 
        for (const label facei : eFaces)
        {
            edgeNormal += surf.faceNormals()[facei];
        }
        return normalised(edgeNormal);
    }
    else
    {
        // Nearest to point
        const triSurface::face_type& localF = surf.localFaces()[nearestFacei];
        return surf.pointNormals()[localF[nearLabel]];
    }
}
 
 
Foam::triSurfaceTools::sideType Foam::triSurfaceTools::edgeSide
(
    const triSurface& surf,
    const point& sample,
    const point& nearestPoint,
    const label edgeI
)
{
    const labelList& eFaces = surf.edgeFaces()[edgeI];
 
    if (eFaces.size() != 2)
    {
        // Surface not closed.
        return UNKNOWN;
    }
    else
    {
        const vectorField& faceNormals = surf.faceNormals();
 
        // Compare to bisector. This is actually correct since edge is
        // nearest so there is a knife-edge.
 
        vector n = 0.5*(faceNormals[eFaces[0]] + faceNormals[eFaces[1]]);
 
        if (((sample - nearestPoint) & n) > 0)
        {
            return OUTSIDE;
        }
        else
        {
            return INSIDE;
        }
    }
}
 
 
// Calculate normal on triangle
Foam::triSurfaceTools::sideType Foam::triSurfaceTools::surfaceSide
(
    const triSurface& surf,
    const point& sample,
    const label nearestFacei
)
{
    const triSurface::face_type& f = surf[nearestFacei];
    const pointField& points = surf.points();
 
    // Find where point is on face
    label nearType, nearLabel;
 
    pointHit pHit = f.nearestPointClassify(sample, points, nearType, nearLabel);
 
    const point& nearestPoint(pHit.rawPoint());
 
    if (nearType == triPointRef::NONE)
    {
        vector sampleNearestVec = (sample - nearestPoint);
 
        // Nearest to face interior. Use faceNormal to determine side
        scalar c = sampleNearestVec & surf.faceNormals()[nearestFacei];
 
        // // If the sample is essentially on the face, do not check for
        // // it being perpendicular.
 
        // scalar magSampleNearestVec = mag(sampleNearestVec);
 
        // if (magSampleNearestVec > SMALL)
        // {
        //     c /= magSampleNearestVec*mag(surf.faceNormals()[nearestFacei]);
 
        //     if (mag(c) < 0.99)
        //     {
        //         FatalErrorInFunction
        //             << "nearestPoint identified as being on triangle face "
        //             << "but vector from nearestPoint to sample is not "
        //             << "perpendicular to the normal." << nl
        //             << "sample: " << sample << nl
        //             << "nearestPoint: " << nearestPoint << nl
        //             << "sample - nearestPoint: "
        //             << sample - nearestPoint << nl
        //             << "normal: " << surf.faceNormals()[nearestFacei] << nl
        //             << "mag(sample - nearestPoint): "
        //             << mag(sample - nearestPoint) << nl
        //             << "normalised dot product: " << c << nl
        //             << "triangle vertices: " << nl
        //             << "    " << points[f[0]] << nl
        //             << "    " << points[f[1]] << nl
        //             << "    " << points[f[2]] << nl
        //             << abort(FatalError);
        //     }
        // }
 
        if (c > 0)
        {
            return OUTSIDE;
        }
        else
        {
            return INSIDE;
        }
    }
    else if (nearType == triPointRef::EDGE)
    {
        // Nearest to edge nearLabel. Note that this can only be a knife-edge
        // situation since otherwise the nearest point could never be the edge.
 
        // Get the edge. Assume order of faceEdges same as face vertices.
        label edgeI = surf.faceEdges()[nearestFacei][nearLabel];
 
        // if (debug)
        // {
        //    // Check order of faceEdges same as face vertices.
        //    const edge& e = surf.edges()[edgeI];
        //    const labelList& meshPoints = surf.meshPoints();
        //    const edge meshEdge(meshPoints[e[0]], meshPoints[e[1]]);
 
        //    if
        //    (
        //        meshEdge
        //     != edge(f[nearLabel], f[f.fcIndex(nearLabel)])
        //    )
        //    {
        //        FatalErrorInFunction
        //            << "Edge:" << edgeI << " local vertices:" << e
        //            << " mesh vertices:" << meshEdge
        //            << " not at position " << nearLabel
        //            << " in face " << f
        //            << abort(FatalError);
        //    }
        // }
 
        return edgeSide(surf, sample, nearestPoint, edgeI);
    }
    else
    {
        // Nearest to point. Could use pointNormal here but is not correct.
        // Instead determine which edge using point is nearest and use test
        // above (nearType == triPointRef::EDGE).
 
 
        const triSurface::face_type& localF = surf.localFaces()[nearestFacei];
        label nearPointi = localF[nearLabel];
 
        const edgeList& edges = surf.edges();
        const pointField& localPoints = surf.localPoints();
        const point& base = localPoints[nearPointi];
 
        const labelList& pEdges = surf.pointEdges()[nearPointi];
 
        scalar minDistSqr = Foam::sqr(GREAT);
        label minEdgeI = -1;
 
        forAll(pEdges, i)
        {
            label edgeI = pEdges[i];
 
            const edge& e = edges[edgeI];
 
            label otherPointi = e.otherVertex(nearPointi);
 
            // Get edge normal.
            vector eVec(localPoints[otherPointi] - base);
            scalar magEVec = mag(eVec);
 
            if (magEVec > VSMALL)
            {
                eVec /= magEVec;
 
                // Get point along vector and determine closest.
                const point perturbPoint = base + eVec;
 
                scalar distSqr = Foam::magSqr(sample - perturbPoint);
 
                if (distSqr < minDistSqr)
                {
                    minDistSqr = distSqr;
                    minEdgeI = edgeI;
                }
            }
        }
 
        if (minEdgeI == -1)
        {
            FatalErrorInFunction
                << "Problem: did not find edge closer than " << minDistSqr
                << abort(FatalError);
        }
 
        return edgeSide(surf, sample, nearestPoint, minEdgeI);
    }
}
 
 
Foam::triSurface Foam::triSurfaceTools::triangulate
(
    const polyBoundaryMesh& bMesh,
    const labelHashSet& includePatches,
    labelList& faceMap,
    const bool verbose
)
{
    const polyMesh& mesh = bMesh.mesh();
 
    // Storage for surfaceMesh. Size estimate.
    List<labelledTri> triangles;
 
    // Calculate number of faces and triangles
    label nFaces = 0;
    label nTris = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
        const pointField& points = patch.points();
        nFaces += patch.size();
        for (const face& f :  patch)
        {
            faceList triFaces(f.nTriangles(points));
            nTris += triFaces.size();
        }
    }
 
    triangles.setSize(nTris);
    faceMap.setSize(nTris);
    label newPatchi = 0;
 
    nTris = 0;
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
        const pointField& points = patch.points();
 
        label nTriTotal = 0;
 
        label faceI = 0;
        for (const face& f :  patch)
        {
            faceList triFaces(f.nTriangles(points));
 
            label nTri = 0;
 
            f.triangles(points, nTri, triFaces);
 
            for (const face& f :  triFaces)
            {
                faceMap[nTris] = patch.start() + faceI;
                triangles[nTris++] = labelledTri(f[0], f[1], f[2], newPatchi);
 
                ++nTriTotal;
            }
 
            faceI++;
        }
 
        if (verbose)
        {
            Pout<< patch.name() << " : generated " << nTriTotal
                << " triangles from " << patch.size() << " faces with"
                << " new patchid " << newPatchi << endl;
        }
 
        newPatchi++;
    }
    //triangles.shrink();
 
    // Create globally numbered tri surface
    triSurface rawSurface(triangles, mesh.points());
 
    // Create locally numbered tri surface
    triSurface surface
    (
        rawSurface.localFaces(),
        rawSurface.localPoints()
    );
 
    // Add patch names to surface
    surface.patches().setSize(newPatchi);
 
    newPatchi = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
 
        surface.patches()[newPatchi].name() = patch.name();
        surface.patches()[newPatchi].geometricType() = patch.type();
 
        newPatchi++;
    }
 
    return surface;
}
 
 
Foam::triSurface Foam::triSurfaceTools::triangulate
(
    const polyBoundaryMesh& bMesh,
    const labelHashSet& includePatches,
    const boundBox& bBox,
    const bool verbose
)
{
    const polyMesh& mesh = bMesh.mesh();
 
    // Storage for surfaceMesh. Size estimate.
    DynamicList<labelledTri> triangles(mesh.nBoundaryFaces());
 
    label newPatchi = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
        const pointField& points = patch.points();
 
        label nTriTotal = 0;
 
        forAll(patch, patchFacei)
        {
            const face& f = patch[patchFacei];
 
            if (bBox.containsAny(points, f))
            {
                faceList triFaces(f.nTriangles(points));
 
                label nTri = 0;
 
                f.triangles(points, nTri, triFaces);
 
                forAll(triFaces, triFacei)
                {
                    const face& f = triFaces[triFacei];
 
                    triangles.append(labelledTri(f[0], f[1], f[2], newPatchi));
 
                    nTriTotal++;
                }
            }
        }
 
        if (verbose)
        {
            Pout<< patch.name() << " : generated " << nTriTotal
                << " triangles from " << patch.size() << " faces with"
                << " new patchid " << newPatchi << endl;
        }
 
        newPatchi++;
    }
    triangles.shrink();
 
    // Create globally numbered tri surface
    triSurface rawSurface(triangles, mesh.points());
 
    // Create locally numbered tri surface
    triSurface surface
    (
        rawSurface.localFaces(),
        rawSurface.localPoints()
    );
 
    // Add patch names to surface
    surface.patches().setSize(newPatchi);
 
    newPatchi = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
 
        surface.patches()[newPatchi].name() = patch.name();
        surface.patches()[newPatchi].geometricType() = patch.type();
 
        ++newPatchi;
    }
 
    return surface;
}
 
 
// triangulation of boundaryMesh
Foam::triSurface Foam::triSurfaceTools::triangulateFaceCentre
(
    const polyBoundaryMesh& bMesh,
    const labelHashSet& includePatches,
    const bool verbose
)
{
    const polyMesh& mesh = bMesh.mesh();
 
    // Storage for new points = meshpoints + face centres.
    const pointField& points = mesh.points();
    const pointField& faceCentres = mesh.faceCentres();
 
    pointField newPoints(points.size() + faceCentres.size());
 
    label newPointi = 0;
 
    forAll(points, pointi)
    {
        newPoints[newPointi++] = points[pointi];
    }
    forAll(faceCentres, facei)
    {
        newPoints[newPointi++] = faceCentres[facei];
    }
 
 
    // Count number of faces.
    DynamicList<labelledTri> triangles(mesh.nBoundaryFaces());
 
    label newPatchi = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
 
        label nTriTotal = 0;
 
        forAll(patch, patchFacei)
        {
            // Face in global coords.
            const face& f = patch[patchFacei];
 
            // Index in newPointi of face centre.
            label fc = points.size() + patchFacei + patch.start();
 
            forAll(f, fp)
            {
                label fp1 = f.fcIndex(fp);
 
                triangles.append(labelledTri(f[fp], f[fp1], fc, newPatchi));
 
                nTriTotal++;
            }
        }
 
        if (verbose)
        {
            Pout<< patch.name() << " : generated " << nTriTotal
                << " triangles from " << patch.size() << " faces with"
                << " new patchid " << newPatchi << endl;
        }
 
        newPatchi++;
    }
    triangles.shrink();
 
 
    // Create globally numbered tri surface
    triSurface rawSurface(triangles, newPoints);
 
    // Create locally numbered tri surface
    triSurface surface
    (
        rawSurface.localFaces(),
        rawSurface.localPoints()
    );
 
    // Add patch names to surface
    surface.patches().setSize(newPatchi);
 
    newPatchi = 0;
 
    for (const label patchi : includePatches)
    {
        const polyPatch& patch = bMesh[patchi];
 
        surface.patches()[newPatchi].name() = patch.name();
        surface.patches()[newPatchi].geometricType() = patch.type();
 
        newPatchi++;
    }
 
    return surface;
}
 
 
Foam::triSurface Foam::triSurfaceTools::delaunay2D(const List<vector2D>& pts)
{
    // Vertices in geompack notation. Note that could probably just use
    // pts.begin() if double precision.
    List<doubleScalar> geompackVertices(2*pts.size());
    label doubleI = 0;
    for (const vector2D& pt : pts)
    {
        geompackVertices[doubleI++] = pt[0];
        geompackVertices[doubleI++] = pt[1];
    }
 
    // Storage for triangles
    int m2 = 3;
    List<int> triangle_node(m2*3*pts.size());
    List<int> triangle_neighbor(m2*3*pts.size());
 
    // Triangulate
    int nTris = 0;
    int err = dtris2
    (
        pts.size(),
        geompackVertices.begin(),
        &nTris,
        triangle_node.begin(),
        triangle_neighbor.begin()
    );
 
    if (err != 0)
    {
        FatalErrorInFunction
            << "Failed dtris2 with vertices:" << pts.size()
            << abort(FatalError);
    }
 
    // Trim
    triangle_node.setSize(3*nTris);
    triangle_neighbor.setSize(3*nTris);
 
    // Convert to triSurface.
    List<labelledTri> faces(nTris);
 
    forAll(faces, i)
    {
        faces[i] = labelledTri
        (
            triangle_node[3*i]-1,
            triangle_node[3*i+1]-1,
            triangle_node[3*i+2]-1,
            0
        );
    }
 
    pointField points(pts.size());
    forAll(pts, i)
    {
        points[i][0] = pts[i][0];
        points[i][1] = pts[i][1];
        points[i][2] = 0.0;
    }
 
    return triSurface(faces, points);
}
 
 
void Foam::triSurfaceTools::calcInterpolationWeights
(
    const triPointRef& tri,
    const point& p,
    FixedList<scalar, 3>& weights
)
{
    // calculate triangle edge vectors and triangle face normal
    // the 'i':th edge is opposite node i
    FixedList<vector, 3> edge;
    edge[0] = tri.c()-tri.b();
    edge[1] = tri.a()-tri.c();
    edge[2] = tri.b()-tri.a();
 
    const vector triangleFaceNormal = edge[1] ^ edge[2];
 
    // calculate edge normal (pointing inwards)
    FixedList<vector, 3> normal;
    for (label i=0; i<3; i++)
    {
        normal[i] = normalised(triangleFaceNormal ^ edge[i]);
    }
 
    weights[0] = ((p-tri.b()) & normal[0]) / max(VSMALL, normal[0] & edge[1]);
    weights[1] = ((p-tri.c()) & normal[1]) / max(VSMALL, normal[1] & edge[2]);
    weights[2] = ((p-tri.a()) & normal[2]) / max(VSMALL, normal[2] & edge[0]);
}
 
 
// Calculate weighting factors from samplePts to triangle it is in.
// Uses linear search.
void Foam::triSurfaceTools::calcInterpolationWeights
(
    const triSurface& s,
    const pointField& samplePts,
    List<FixedList<label, 3>>& allVerts,
    List<FixedList<scalar, 3>>& allWeights
)
{
    allVerts.setSize(samplePts.size());
    allWeights.setSize(samplePts.size());
 
    const pointField& points = s.points();
 
    forAll(samplePts, i)
    {
        const point& samplePt = samplePts[i];
 
        FixedList<label, 3>& verts = allVerts[i];
        FixedList<scalar, 3>& weights = allWeights[i];
 
        scalar minDistance = GREAT;
 
        for (const labelledTri& f : s)
        {
            triPointRef tri(f.tri(points));
 
            label nearType, nearLabel;
 
            pointHit nearest = tri.nearestPointClassify
            (
                samplePt,
                nearType,
                nearLabel
            );
 
            if (nearest.hit())
            {
                // samplePt inside triangle
                verts[0] = f[0];
                verts[1] = f[1];
                verts[2] = f[2];
 
                calcInterpolationWeights(tri, nearest.rawPoint(), weights);
 
                //Pout<< "calcScalingFactors : samplePt:" << samplePt
                //    << " inside triangle:" << facei
                //    << " verts:" << verts
                //    << " weights:" << weights
                //    << endl;
 
                break;
            }
            else if (nearest.distance() < minDistance)
            {
                minDistance = nearest.distance();
 
                // Outside triangle. Store nearest.
 
                if (nearType == triPointRef::POINT)
                {
                    verts[0] = f[nearLabel];
                    weights[0] = 1;
                    verts[1] = -1;
                    weights[1] = -GREAT;
                    verts[2] = -1;
                    weights[2] = -GREAT;
 
                    //Pout<< "calcScalingFactors : samplePt:" << samplePt
                    //    << " distance:" << nearest.distance()
                    //    << " from point:" << points[f[nearLabel]]
                    //    << endl;
                }
                else if (nearType == triPointRef::EDGE)
                {
                    verts[0] = f[nearLabel];
                    verts[1] = f[f.fcIndex(nearLabel)];
                    verts[2] = -1;
 
                    const point& p0 = points[verts[0]];
                    const point& p1 = points[verts[1]];
 
                    scalar s = min
                    (
                        1,
                        max
                        (
                            0,
                            mag(nearest.rawPoint() - p0)/mag(p1 - p0)
                        )
                    );
 
                    // Interpolate
                    weights[0] = 1 - s;
                    weights[1] = s;
                    weights[2] = -GREAT;
 
                    //Pout<< "calcScalingFactors : samplePt:" << samplePt
                    //    << " distance:" << nearest.distance()
                    //    << " from edge:" << p0 << p1 << " s:" << s
                    //    << endl;
                }
                else
                {
                    // triangle. Can only happen because of truncation errors.
                    verts[0] = f[0];
                    verts[1] = f[1];
                    verts[2] = f[2];
 
                    calcInterpolationWeights(tri, nearest.rawPoint(), weights);
 
                    //Pout<< "calcScalingFactors : samplePt:" << samplePt
                    //    << " distance:" << nearest.distance()
                    //    << " to verts:" << verts
                    //    << " weights:" << weights
                    //    << endl;
 
                    break;
                }
            }
        }
    }
}
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Checking:
 
bool Foam::triSurfaceTools::validTri
(
    const triSurface& surf,
    const label facei,
    const bool verbose
)
{
    typedef labelledTri FaceType;
    const FaceType& f = surf[facei];
 
    // Simple check on indices ok.
    for (const label pointi : f)
    {
        if (pointi < 0 || pointi >= surf.points().size())
        {
            if (verbose)
            {
                WarningInFunction
                    << "triangle " << facei << " vertices " << f
                    << " uses point indices outside point range 0.."
                    << surf.points().size()-1 << endl;
            }
            return false;
        }
    }
 
    if (f[0] == f[1] || f[0] == f[2] || f[1] == f[2])
    {
        if (verbose)
        {
            WarningInFunction
                << "triangle " << facei
                << " uses non-unique vertices " << f
                << " coords:" << f.points(surf.points()) << endl;
        }
        return false;
    }
 
    // duplicate triangle check
 
    const labelList& fFaces = surf.faceFaces()[facei];
 
    // Check if faceNeighbours use same points as this face.
    // Note: discards normal information - sides of baffle are merged.
    for (const label nbrFacei : fFaces)
    {
        if (nbrFacei <= facei)
        {
            // lower numbered faces already checked
            continue;
        }
 
        const FaceType& nbrF = surf[nbrFacei];
 
        // Same as calling triFace::compare(f, nbrF) == 1 only
        if
        (
            (f[0] == nbrF[0] || f[0] == nbrF[1] || f[0] == nbrF[2])
         && (f[1] == nbrF[0] || f[1] == nbrF[1] || f[1] == nbrF[2])
         && (f[2] == nbrF[0] || f[2] == nbrF[1] || f[2] == nbrF[2])
        )
        {
            if (verbose)
            {
                WarningInFunction
                    << "triangle " << facei << " vertices " << f
                    << " has the same vertices as triangle " << nbrFacei
                    << " vertices " << nbrF
                    << " coords:" << f.points(surf.points()) << endl;
            }
 
            return false;
        }
    }
 
    return true;
}
 
 
bool Foam::triSurfaceTools::validTri
(
    const MeshedSurface<face>& surf,
    const label facei,
    const bool verbose
)
{
    typedef face FaceType;
    const FaceType& f = surf[facei];
 
    if (f.size() != 3)
    {
        if (verbose)
        {
            WarningInFunction
                << "face " << facei
                << " is not a triangle, it has " << f.size()
                << " indices" << endl;
        }
        return false;
    }
 
    // Simple check on indices ok.
    for (const label pointi : f)
    {
        if (pointi < 0 || pointi >= surf.points().size())
        {
            if (verbose)
            {
                WarningInFunction
                    << "triangle " << facei << " vertices " << f
                    << " uses point indices outside point range 0.."
                    << surf.points().size()-1 << endl;
            }
            return false;
        }
    }
 
    if (f[0] == f[1] || f[0] == f[2] || f[1] == f[2])
    {
        if (verbose)
        {
            WarningInFunction
                << "triangle " << facei
                << " uses non-unique vertices " << f
                << " coords:" << f.points(surf.points()) << endl;
        }
        return false;
    }
 
    // duplicate triangle check
 
    const labelList& fFaces = surf.faceFaces()[facei];
 
    // Check if faceNeighbours use same points as this face.
    // Note: discards normal information - sides of baffle are merged.
    for (const label nbrFacei : fFaces)
    {
        if (nbrFacei <= facei)
        {
            // lower numbered faces already checked
            continue;
        }
 
        const FaceType& nbrF = surf[nbrFacei];
 
        // Same as calling triFace::compare(f, nbrF) == 1 only
        if
        (
            (f[0] == nbrF[0] || f[0] == nbrF[1] || f[0] == nbrF[2])
         && (f[1] == nbrF[0] || f[1] == nbrF[1] || f[1] == nbrF[2])
         && (f[2] == nbrF[0] || f[2] == nbrF[1] || f[2] == nbrF[2])
        )
        {
            if (verbose)
            {
                WarningInFunction
                    << "triangle " << facei << " vertices " << f
                    << " has the same vertices as triangle " << nbrFacei
                    << " vertices " << nbrF
                    << " coords:" << f.points(surf.points()) << endl;
            }
            return false;
        }
    }
 
    return true;
}
 
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Tracking:
 
// Test point on surface to see if is on face,edge or point.
Foam::surfaceLocation Foam::triSurfaceTools::classify
(
    const triSurface& s,
    const label triI,
    const point& trianglePoint
)
{
    surfaceLocation nearest;
 
    // Nearest point could be on point or edge. Retest.
    label index, elemType;
    //bool inside =
    triPointRef(s[triI].tri(s.points())).classify
    (
        trianglePoint,
        elemType,
        index
    );
 
    nearest.setPoint(trianglePoint);
 
    if (elemType == triPointRef::NONE)
    {
        nearest.setHit();
        nearest.setIndex(triI);
        nearest.elementType() = triPointRef::NONE;
    }
    else if (elemType == triPointRef::EDGE)
    {
        nearest.setMiss();
        nearest.setIndex(s.faceEdges()[triI][index]);
        nearest.elementType() = triPointRef::EDGE;
    }
    else //if (elemType == triPointRef::POINT)
    {
        nearest.setMiss();
        nearest.setIndex(s.localFaces()[triI][index]);
        nearest.elementType() = triPointRef::POINT;
    }
 
    return nearest;
}
 
 
Foam::surfaceLocation Foam::triSurfaceTools::trackToEdge
(
    const triSurface& s,
    const surfaceLocation& start,
    const surfaceLocation& end,
    const plane& cutPlane
)
{
    // Start off from starting point
    surfaceLocation nearest = start;
    nearest.setMiss();
 
    // See if in same triangle as endpoint. If so snap.
    snapToEnd(s, end, nearest);
 
    if (!nearest.hit())
    {
        // Not yet at end point
 
        if (start.elementType() == triPointRef::NONE)
        {
            // Start point is inside triangle. Trivial cases already handled
            // above.
 
            // end point is on edge or point so cross current triangle to
            // see which edge is cut.
 
            nearest = cutEdge
            (
                s,
                start.index(),          // triangle
                -1,                     // excludeEdge
                -1,                     // excludePoint
                start.rawPoint(),
                cutPlane,
                end.rawPoint()
            );
            nearest.elementType() = triPointRef::EDGE;
            nearest.triangle() = start.index();
            nearest.setMiss();
        }
        else if (start.elementType() == triPointRef::EDGE)
        {
            // Pick connected triangle that is most in direction.
            const labelList& eFaces = s.edgeFaces()[start.index()];
 
            nearest = visitFaces
            (
                s,
                eFaces,
                start,
                start.index(),      // excludeEdgeI
                -1,                 // excludePointi
                end,
                cutPlane
            );
        }
        else    // start.elementType() == triPointRef::POINT
        {
            const labelList& pFaces = s.pointFaces()[start.index()];
 
            nearest = visitFaces
            (
                s,
                pFaces,
                start,
                -1,                 // excludeEdgeI
                start.index(),      // excludePointi
                end,
                cutPlane
            );
        }
        snapToEnd(s, end, nearest);
    }
    return nearest;
}
 
 
void Foam::triSurfaceTools::track
(
    const triSurface& s,
    const surfaceLocation& endInfo,
    const plane& cutPlane,
    surfaceLocation& hitInfo
)
{
    //OFstream str("track.obj");
    //label vertI = 0;
    //meshTools::writeOBJ(str, hitInfo.rawPoint());
    //vertI++;
 
    // Track across surface.
    while (true)
    {
        //Pout<< "Tracking from:" << nl
        //    << "    " << hitInfo.info()
        //    << endl;
 
        hitInfo = trackToEdge
        (
            s,
            hitInfo,
            endInfo,
            cutPlane
        );
 
        //meshTools::writeOBJ(str, hitInfo.rawPoint());
        //vertI++;
        //str<< "l " << vertI-1 << ' ' << vertI << nl;
 
        //Pout<< "Tracked to:" << nl
        //    << "    " << hitInfo.info() << endl;
 
        if (hitInfo.hit() || hitInfo.triangle() == -1)
        {
            break;
        }
    }
}
 
 
// ************************************************************************* //