PDRblock.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | www.openfoam.com
     \\/     M anipulation  |
-------------------------------------------------------------------------------
    Copyright (C) 2019-2020 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "PDRblock.H"
#include "ListOps.H"
#include "emptyPolyPatch.H"
 
// Output when verbosity is enabled
#undef  Log
#define Log if (verbose_) Info
 
 
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
const Foam::Enum
<
    Foam::PDRblock::expansionType
>
Foam::PDRblock::expansionNames_
({
    { expansionType::EXPAND_UNIFORM, "uniform" },
    { expansionType::EXPAND_RATIO, "ratio" },
    { expansionType::EXPAND_RELATIVE, "relative"}
});
 
 
// * * * * * * * * * * * * * * * Local Functions * * * * * * * * * * * * * * //
 
namespace Foam
{
    //- Calculate geometric expansion factor from expansion ratio
    inline scalar calcGexp(const scalar expRatio, const label nDiv)
    {
        return nDiv > 1 ? pow(expRatio, 1.0/(nDiv - 1)) : 0.0;
    }
 
    //- Calculate geometric ratio from relative ratio
    inline scalar relativeToGeometricRatio
    (
        const scalar expRatio,
        const label nDiv
    )
    {
        return nDiv > 1 ? pow(expRatio, (nDiv - 1)) : 1.0;
    }
 
} // End namespace Foam
 
 
// * * * * * * * * * * * * * Static Member Functions * * * * * * * * * * * * //
 
bool Foam::PDRblock::checkMonotonic
(
    const direction cmpt,
    const UList<scalar>& pts
)
{
    const label len = pts.size();
 
    if (!len)
    {
        return false;
    }
 
    const scalar& minVal = pts[0];
 
    for (label i=1; i < len; ++i)
    {
        if (pts[i] <= minVal)
        {
            FatalErrorInFunction
                << "Points in " << vector::componentNames[cmpt]
                << " direction do not increase monotonically" << nl
                << flatOutput(pts) << nl << nl
                << exit(FatalError);
        }
    }
 
    return true;
}
 
 
const Foam::PDRblock& Foam::PDRblock::null()
{
    return NullObjectRef<PDRblock>();
}
 
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
void Foam::PDRblock::adjustSizes()
{
    // Adjust i-j-k addressing
    sizes().x() = grid_.x().nCells();
    sizes().y() = grid_.y().nCells();
    sizes().z() = grid_.z().nCells();
 
    if (sizes().x() <= 0 || sizes().y() <= 0 || sizes().z() <= 0)
    {
        // Sanity check. Silently disallow bad sizing
        ijkMesh::clear();
 
        grid_.x().clear();
        grid_.y().clear();
        grid_.z().clear();
 
        bounds_ = boundBox::invertedBox;
        minEdgeLen_ = Zero;
        return;
    }
 
    // Adjust boundBox
    bounds_.min().x() = grid_.x().first();
    bounds_.min().y() = grid_.y().first();
    bounds_.min().z() = grid_.z().first();
 
    bounds_.max().x() = grid_.x().last();
    bounds_.max().y() = grid_.y().last();
    bounds_.max().z() = grid_.z().last();
 
    // Min edge length
    minEdgeLen_ = GREAT;
 
    for (direction cmpt=0; cmpt < vector::nComponents; ++cmpt)
    {
        const label nEdge = grid_[cmpt].nCells();
 
        for (label edgei=0; edgei < nEdge; ++edgei)
        {
            const scalar len = grid_[cmpt].width(edgei);
            minEdgeLen_ = min(minEdgeLen_, len);
        }
    }
}
 
 
void Foam::PDRblock::readGridControl
(
    const direction cmpt,
    const dictionary& dict,
    const scalar scaleFactor,
    expansionType expandType
)
{
    //- The begin/end nodes for each segment
    scalarList knots;
 
    // The number of division per segment
    labelList divisions;
 
    // The expansion ratio per segment
    scalarList expansion;
 
    Log << "Reading grid control for "
        << vector::componentNames[cmpt] << " direction" << nl;
 
    // Points
    // ~~~~~~
 
    dict.readEntry("points", knots);
 
    const label nSegments = (knots.size()-1);
 
    if (nSegments < 1)
    {
        FatalIOErrorInFunction(dict)
            << "Must define at least two control points:"
            << " in " << vector::componentNames[cmpt]
            << " direction" << nl
            << exit(FatalIOError);
    }
 
    // Apply scaling
    if (scaleFactor > 0)
    {
        for (scalar& pt : knots)
        {
            pt *= scaleFactor;
        }
    }
 
    // Do points increase monotonically?
    checkMonotonic(cmpt, knots);
 
    Log << "    points : " << flatOutput(knots) << nl;
 
 
    // Divisions
    // ~~~~~~~~~
 
    dict.readEntry("nCells", divisions);
 
    label nTotalDivs = 0;
    for (const label ndiv : divisions)
    {
        nTotalDivs += ndiv;
 
        if (ndiv < 1)
        {
            FatalIOErrorInFunction(dict)
                << "Negative or zero divisions:"
                << " in " << vector::componentNames[cmpt]
                << " direction" << nl
                << exit(FatalIOError);
        }
    }
 
    if (divisions.size() != nSegments)
    {
        FatalIOErrorInFunction(dict)
            << "Mismatch in number of divisions and number of points:"
            << " in " << vector::componentNames[cmpt]
            << " direction" << nl
            << exit(FatalIOError);
    }
    else if (!nTotalDivs)
    {
        FatalIOErrorInFunction(dict)
            << "No grid divisions at all:"
            << " in " << vector::componentNames[cmpt]
            << " direction" << nl
            << exit(FatalIOError);
    }
 
    Log << "    nCells : " << flatOutput(divisions) << nl;
 
 
    // Expansion ratios
    // ~~~~~~~~~~~~~~~~
 
    dict.readIfPresent("ratios", expansion);
 
    // Correct expansion ratios - negative is the same as inverse.
    for (scalar& expRatio : expansion)
    {
        if (expRatio < 0)
        {
            expRatio = 1.0/(-expRatio);
        }
    }
 
    if (expansion.size() && divisions.size() != expansion.size())
    {
        FatalIOErrorInFunction(dict)
            << "Mismatch in number of expansion ratios and divisions:"
            << " in " << vector::componentNames[cmpt]
            << " direction" << nl
            << exit(FatalIOError);
    }
 
    if (expansion.empty())
    {
        expansion.resize(nSegments, scalar(1));
 
        if (expandType != expansionType::EXPAND_UNIFORM)
        {
            expandType = expansionType::EXPAND_UNIFORM;
 
            Log << "Warning: no 'ratios', use uniform spacing" << nl;
        }
    }
    else
    {
        switch (expandType)
        {
            case expansionType::EXPAND_UNIFORM:
            {
                expansion = scalar(1);
                break;
            }
 
            case expansionType::EXPAND_RATIO:
            {
                Log << "    ratios : " << flatOutput(expansion) << nl;
                break;
            }
 
            case expansionType::EXPAND_RELATIVE:
            {
                Log << "  relative : " << flatOutput(expansion) << nl;
 
                auto divIter = divisions.cbegin();
 
                for (scalar& expRatio : expansion)
                {
                    expRatio = relativeToGeometricRatio(expRatio, *divIter);
                    ++divIter;
                }
 
                Log << "    ratios : " << flatOutput(expansion) << nl;
                break;
            }
        }
    }
 
 
    // Define the grid points
 
    scalarList& gridPoint = grid_[cmpt];
    gridPoint.resize(nTotalDivs+1);
 
    label start = 0;
 
    for (label segmenti=0; segmenti < nSegments; ++segmenti)
    {
        const label nDiv = divisions[segmenti];
        const scalar expRatio = expansion[segmenti];
 
        SubList<scalar> subPoint(gridPoint, nDiv+1, start);
        start += nDiv;
 
        subPoint[0] = knots[segmenti];
        subPoint[nDiv] = knots[segmenti+1];
 
        const scalar dist = (subPoint.last() - subPoint.first());
 
        if
        (
            expandType == expansionType::EXPAND_UNIFORM
         || equal(expRatio, 1)
        )
        {
            for (label i=1; i < nDiv; ++i)
            {
                subPoint[i] = (subPoint[0] + (dist * i)/nDiv);
            }
        }
        else
        {
            // Geometric expansion factor from the expansion ratio
            const scalar expFact = calcGexp(expRatio, nDiv);
 
            for (label i=1; i < nDiv; ++i)
            {
                subPoint[i] =
                (
                    subPoint[0]
                  + dist * (1.0 - pow(expFact, i))/(1.0 - pow(expFact, nDiv))
                );
            }
        }
    }
}
 
 
void Foam::PDRblock::readBoundary(const dictionary& dict)
{
    Log << "Reading boundary entries" << nl;
 
    PtrList<entry> patchEntries;
 
    if (dict.found("boundary"))
    {
        PtrList<entry> newEntries(dict.lookup("boundary"));
        patchEntries.transfer(newEntries);
    }
 
    patches_.clear();
    patches_.resize(patchEntries.size());
 
    // Hex cell has 6 sides
    const labelRange validFaceId(0, 6);
 
    // Track which sides have been handled
    labelHashSet handled;
 
    forAll(patchEntries, patchi)
    {
        if (!patchEntries.set(patchi))
        {
            continue;
        }
 
        const entry& e = patchEntries[patchi];
 
        if (!e.isDict())
        {
            FatalIOErrorInFunction(dict)
                << "Entry " << e
                << " in boundary section is not a valid dictionary."
                << exit(FatalIOError);
        }
 
        const dictionary& patchDict = e.dict();
 
        const word& patchName = e.keyword();
 
        const word patchType(patchDict.get<word>("type"));
 
        labelList faceLabels(patchDict.get<labelList>("faces"));
 
        labelHashSet patchFaces(faceLabels);
 
        if (faceLabels.size() != patchFaces.size())
        {
            WarningInFunction
                << "Patch: " << patchName
                << ": Ignoring duplicate face ids" << nl;
        }
 
        label nErased = patchFaces.filterKeys(validFaceId);
        if (nErased)
        {
            WarningInFunction
                << "Patch: " << patchName << ": Ignoring " << nErased
                << " faces with invalid identifiers" << nl;
        }
 
        nErased = patchFaces.erase(handled);
        if (nErased)
        {
            WarningInFunction
                << "Patch: " << patchName << ": Ignoring " << nErased
                << " faces, which were already handled" << nl;
        }
 
        // Mark these faces as having been handled
        handled += patchFaces;
 
 
        // Save information for later access during mesh creation.
 
        patches_.set(patchi, new boundaryEntry());
 
        boundaryEntry& bentry = patches_[patchi];
 
        bentry.name_ = patchName;
        bentry.type_ = patchType;
        bentry.size_ = 0;
        bentry.faces_ = patchFaces.sortedToc();
 
        // Count patch faces
        for (const label shapeFacei : bentry.faces_)
        {
            bentry.size_ += nBoundaryFaces(shapeFacei);
        }
    }
 
 
    // Deal with unhandled faces
 
    labelHashSet missed(identity(6));
    missed.erase(handled);
 
    if (missed.size())
    {
        patches_.append(new boundaryEntry());
 
        boundaryEntry& bentry = patches_.last();
 
        bentry.name_ = "defaultFaces";
        bentry.type_ = emptyPolyPatch::typeName;
        bentry.size_ = 0;
        bentry.faces_ = missed.sortedToc();
 
        // Count patch faces
        for (const label shapeFacei : bentry.faces_)
        {
            bentry.size_ += nBoundaryFaces(shapeFacei);
        }
 
 
        // Use name/type from "defaultPatch" entry if available
        // - be generous with error handling
 
        const dictionary* defaultEntry = dict.findDict("defaultPatch");
        if (defaultEntry)
        {
            defaultEntry->readIfPresent("name", bentry.name_);
            defaultEntry->readIfPresent("type", bentry.type_);
        }
    }
 
    if (verbose_)
    {
        label patchi = 0;
        for (const boundaryEntry& bentry : patches_)
        {
            Info<< "    patch: " << patchi
                << " (size: " << bentry.size_
                << " type: " << bentry.type_
                << ") name: " << bentry.name_
                << " faces: " << flatOutput(bentry.faces_) << nl;
 
            ++patchi;
        }
    }
}
 
 
// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
Foam::PDRblock::PDRblock
(
    const UList<scalar>& xgrid,
    const UList<scalar>& ygrid,
    const UList<scalar>& zgrid
)
:
    PDRblock()
{
    // Default boundaries with patchi == shapeFacei
    patches_.resize(6);
    for (label patchi=0; patchi < 6; ++patchi)
    {
        patches_.set(patchi, new boundaryEntry());
 
        boundaryEntry& bentry = patches_[patchi];
 
        bentry.name_ = "patch" + Foam::name(patchi);
        bentry.type_ = "patch";
        bentry.size_ = 0;
        bentry.faces_ = labelList(one(), patchi);
    }
 
    reset(xgrid, ygrid, zgrid);
}
 
 
Foam::PDRblock::PDRblock(const dictionary& dict, bool verbose)
:
    PDRblock()
{
    verbose_ = verbose;
 
    read(dict);
}
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
bool Foam::PDRblock::read(const dictionary& dict)
{
    const scalar scaleFactor(dict.getOrDefault<scalar>("scale", -1));
 
    expansionType expandType
    (
        expansionNames_.getOrDefault
        (
            "expansion",
            dict,
            expansionType::EXPAND_RATIO
        )
    );
 
    readGridControl(0, dict.subDict("x"), scaleFactor, expandType);
    readGridControl(1, dict.subDict("y"), scaleFactor, expandType);
    readGridControl(2, dict.subDict("z"), scaleFactor, expandType);
 
    adjustSizes();
 
    readBoundary(dict);
 
    return true;
}
 
 
void Foam::PDRblock::reset
(
    const UList<scalar>& xgrid,
    const UList<scalar>& ygrid,
    const UList<scalar>& zgrid
)
{
    static_cast<scalarList&>(grid_.x()) = xgrid;
    static_cast<scalarList&>(grid_.y()) = ygrid;
    static_cast<scalarList&>(grid_.z()) = zgrid;
 
    #ifdef FULLDEBUG
    for (direction cmpt=0; cmpt < vector::nComponents; ++cmpt)
    {
        checkMonotonic(cmpt, grid_[cmpt]);
    }
    #endif
 
    adjustSizes();
 
    // Adjust boundaries
    for (boundaryEntry& bentry : patches_)
    {
        bentry.size_ = 0;
 
        // Count patch faces
        for (const label shapeFacei : bentry.faces_)
        {
            bentry.size_ += nBoundaryFaces(shapeFacei);
        }
    }
}
 
 
bool Foam::PDRblock::findCell(const point& pt, labelVector& pos) const
{
    // Out-of-bounds is handled explicitly, for efficiency and consistency,
    // but principally to ensure that findLower() returns a valid
    // result when the point is to the right of the bounds.
 
    // Since findLower returns the lower index, it corresponds to the
    // cell in which the point is found
 
    if (!bounds_.contains(pt))
    {
        return false;
    }
 
    for (direction cmpt=0; cmpt < labelVector::nComponents; ++cmpt)
    {
        // Binary search
        pos[cmpt] = findLower(grid_[cmpt], pt[cmpt]);
    }
 
    return true;
}
 
 
bool Foam::PDRblock::gridIndex
(
    const point& pt,
    labelVector& pos,
    const scalar relTol
) const
{
    const scalar tol = relTol * minEdgeLen_;
 
    for (direction cmpt=0; cmpt < labelVector::nComponents; ++cmpt)
    {
        // Linear search
        pos[cmpt] = grid_[cmpt].findIndex(pt[cmpt], tol);
 
        if (pos[cmpt] < 0) return false;
    }
 
    return true;
}
 
 
Foam::labelVector Foam::PDRblock::findCell(const point& pt) const
{
    labelVector pos;
 
    if (findCell(pt, pos))
    {
        return pos;
    }
 
    return labelVector(-1,-1,-1);
}
 
 
Foam::labelVector Foam::PDRblock::gridIndex
(
    const point& pt,
    const scalar relTol
) const
{
    labelVector pos;
 
    if (gridIndex(pt, pos, relTol))
    {
        return pos;
    }
 
    return labelVector(-1,-1,-1);
}
 
 
// ************************************************************************* //