sampledMeshedSurface.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | www.openfoam.com
     \\/     M anipulation  |
-------------------------------------------------------------------------------
    Copyright (C) 2011-2016 OpenFOAM Foundation
    Copyright (C) 2016-2021 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "sampledMeshedSurface.H"
#include "meshSearch.H"
#include "Tuple2.H"
#include "globalIndex.H"
#include "treeDataCell.H"
#include "treeDataFace.H"
#include "meshTools.H"
#include "addToRunTimeSelectionTable.H"
 
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
const Foam::Enum
<
    Foam::sampledMeshedSurface::samplingSource
>
Foam::sampledMeshedSurface::samplingSourceNames_
({
    { samplingSource::cells, "cells" },
    { samplingSource::insideCells, "insideCells" },
    { samplingSource::boundaryFaces, "boundaryFaces" },
});
 
 
namespace Foam
{
    defineTypeNameAndDebug(sampledMeshedSurface, 0);
    // Use shorter name only
    addNamedToRunTimeSelectionTable
    (
        sampledSurface,
        sampledMeshedSurface,
        word,
        meshedSurface
    );
    // Compatibility name (1912)
    addNamedToRunTimeSelectionTable
    (
        sampledSurface,
        sampledMeshedSurface,
        word,
        sampledTriSurfaceMesh
    );
 
} // End namespace Foam
 
 
// * * * * * * * * * * * * * * * Local Functions * * * * * * * * * * * * * * //
 
namespace Foam
{
 
// The IOobject for reading
inline static IOobject selectReadIO(const word& name, const Time& runTime)
{
    return IOobject
    (
        name,
        runTime.constant(),     // instance
        "triSurface",           // local
        runTime,                // registry
        IOobject::MUST_READ,
        IOobject::NO_WRITE,
        false   // no register
    );
}
 
} // End namespace Foam
 
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
void Foam::sampledMeshedSurface::setZoneMap()
{
    // Populate zoneIds_ based on surfZone information
 
    const meshedSurface& s = static_cast<const meshedSurface&>(*this);
 
    const auto& zones = s.surfZones();
 
    zoneIds_.resize(s.size());
 
    // Trivial case
    if (zoneIds_.empty() || zones.size() <= 1)
    {
        zoneIds_ = 0;
        return;
    }
 
 
    label beg = 0;
 
    forAll(zones, zonei)
    {
        const label len = min(zones[zonei].size(), zoneIds_.size() - beg);
 
        // Assign sub-zone Ids
        SubList<label>(zoneIds_, len, beg) = zonei;
 
        beg += len;
    }
 
    // Anything remaining? Should not happen
    {
        const label len = (zoneIds_.size() - beg);
 
        if (len > 0)
        {
            SubList<label>(zoneIds_, len, beg) = max(0, zones.size()-1);
        }
    }
}
 
 
// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
bool Foam::sampledMeshedSurface::update(const meshSearch& meshSearcher)
{
    // Global numbering for cells/faces
    // - only used to uniquely identify local elements
    globalIndex globalCells(onBoundary() ? mesh().nFaces() : mesh().nCells());
 
    // Find the cells the triangles of the surface are in.
    // Does approximation by looking at the face centres only
    const pointField& fc = surface_.faceCentres();
 
    // sqr(distance), global index
    typedef Tuple2<scalar, label> nearInfo;
    List<nearInfo> nearest(fc.size(), nearInfo(Foam::sqr(GREAT), labelMax));
 
    if (sampleSource_ == samplingSource::cells)
    {
        // Search for nearest cell
 
        const indexedOctree<treeDataCell>& cellTree = meshSearcher.cellTree();
 
        forAll(fc, facei)
        {
            const point& pt = fc[facei];
            auto& near = nearest[facei];
 
            pointIndexHit info = cellTree.findNearest(pt, Foam::sqr(GREAT));
 
            if (info.hit())
            {
                near.first()  = magSqr(info.hitPoint()-pt);
                near.second() = globalCells.toGlobal(info.index());
            }
        }
    }
    else if (sampleSource_ == samplingSource::insideCells)
    {
        // Search for cell containing point
 
        const auto& cellTree = meshSearcher.cellTree();
 
        forAll(fc, facei)
        {
            const point& pt = fc[facei];
            auto& near = nearest[facei];
 
            if (cellTree.bb().contains(pt))
            {
                const label index = cellTree.findInside(pt);
                if (index != -1)
                {
                    near.first()  = 0;
                    near.second() = globalCells.toGlobal(index);
                }
            }
        }
    }
    else  // samplingSource::boundaryFaces
    {
        // Search for nearest boundary face
        // on all non-coupled boundary faces
 
        const auto& bndTree = meshSearcher.nonCoupledBoundaryTree();
 
        forAll(fc, facei)
        {
            const point& pt = fc[facei];
            auto& near = nearest[facei];
 
            pointIndexHit info = bndTree.findNearest(pt, sqr(GREAT));
 
            if (info.hit())
            {
                near.first()  = magSqr(info.hitPoint()-pt);
                near.second() =
                    globalCells.toGlobal
                    (
                        bndTree.shapes().faceLabels()[info.index()]
                    );
            }
        }
    }
 
 
    // See which processor has the nearest. Mark and subset
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    Pstream::listCombineAllGather(nearest, minFirstEqOp<scalar>{});
 
    labelList cellOrFaceLabels(fc.size(), -1);
 
    bitSet facesToSubset(fc.size());
 
    forAll(nearest, facei)
    {
        const auto& near = nearest[facei];
 
        const label index = near.second();
 
        if (index == labelMax)
        {
            // Not found on any processor, or simply too far.
            // How to map?
        }
        else if (globalCells.isLocal(index))
        {
            facesToSubset.set(facei);
 
            // Mark as special if too far away
            cellOrFaceLabels[facei] =
            (
                (near.first() < maxDistanceSqr_)
              ? globalCells.toLocal(index)
              : -1
            );
        }
    }
 
 
    if (debug)
    {
        Pout<< "Local out of faces:" << cellOrFaceLabels.size()
            << " keeping:" << facesToSubset.count() << endl;
    }
 
 
    // Subset the surface
    meshedSurface& s = static_cast<meshedSurface&>(*this);
 
    labelList pointMap;
    labelList faceMap;
 
    s = surface_.subsetMesh(facesToSubset, pointMap, faceMap);
 
 
    // Ensure zoneIds_ are indeed correct
    setZoneMap();
 
 
    // Subset cellOrFaceLabels (for compact faces)
    cellOrFaceLabels = labelUIndList(cellOrFaceLabels, faceMap)();
 
 
    // Collect the samplePoints and sampleElements
    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
    if (sampledSurface::isPointData())
    {
        // With point interpolation
 
        samplePoints_ = points();
        sampleElements_.resize(pointMap.size(), -1);
 
        // Store any face per point (without using pointFaces())
        labelList pointToFace(std::move(pointMap));
 
        forAll(s, facei)
        {
            const face& f = s[facei];
 
            for (const label labi : f)
            {
                pointToFace[labi] = facei;
            }
        }
 
 
        if (sampleSource_ == samplingSource::cells)
        {
            // sampleElements_ : per surface point, the cell
            // samplePoints_   : per surface point, a location inside the cell
 
            forAll(samplePoints_, pointi)
            {
                // Use _copy_ of point
                const point pt = samplePoints_[pointi];
 
                const label celli = cellOrFaceLabels[pointToFace[pointi]];
 
                sampleElements_[pointi] = celli;
 
                if
                (
                    celli >= 0
                 && !mesh().pointInCell(pt, celli, meshSearcher.decompMode())
                )
                {
                    // Point not inside cell
                    // Find nearest point on faces of cell
 
                    scalar minDistSqr = VGREAT;
 
                    for (const label facei : mesh().cells()[celli])
                    {
                        const face& f = mesh().faces()[facei];
 
                        pointHit info =
                            f.nearestPoint
                            (
                                pt,
                                mesh().points()
                            );
 
                        if (info.distance() < minDistSqr)
                        {
                            minDistSqr = info.distance();
                            samplePoints_[pointi] = info.rawPoint();
                        }
                    }
                }
            }
        }
        else if (sampleSource_ == samplingSource::insideCells)
        {
            // sampleElements_ : per surface point the cell
            // samplePoints_   : per surface point a location inside the cell
 
            forAll(samplePoints_, pointi)
            {
                const label celli = cellOrFaceLabels[pointToFace[pointi]];
 
                sampleElements_[pointi] = celli;
            }
        }
        else  // samplingSource::boundaryFaces
        {
            // sampleElements_ : per surface point, the boundary face containing
            //                   the location
            // samplePoints_   : per surface point, a location on the boundary
 
            forAll(samplePoints_, pointi)
            {
                const point& pt = samplePoints_[pointi];
 
                const label facei = cellOrFaceLabels[pointToFace[pointi]];
 
                sampleElements_[pointi] = facei;
 
                if (facei >= 0)
                {
                    samplePoints_[pointi] =
                        mesh().faces()[facei].nearestPoint
                        (
                            pt,
                            mesh().points()
                        ).rawPoint();
                }
            }
        }
    }
    else
    {
        // if sampleSource_ == cells:
        //      sampleElements_ : per surface face, the cell
        //      samplePoints_   : n/a
        // if sampleSource_ == insideCells:
        //      sampleElements_ : -1 or per surface face, the cell
        //      samplePoints_   : n/a
        // if sampleSource_ == boundaryFaces:
        //      sampleElements_ : per surface face, the boundary face
        //      samplePoints_   : n/a
 
        sampleElements_.transfer(cellOrFaceLabels);
        samplePoints_.clear();
    }
 
 
    if (debug)
    {
        this->clearOut();
        OFstream str(mesh().time().path()/"surfaceToMesh.obj");
        Info<< "Dumping correspondence from local surface (points or faces)"
            << " to mesh (cells or faces) to " << str.name() << endl;
 
        const vectorField& centres =
        (
            onBoundary()
          ? mesh().faceCentres()
          : mesh().cellCentres()
        );
 
        if (sampledSurface::isPointData())
        {
            label vertI = 0;
            forAll(samplePoints_, pointi)
            {
                meshTools::writeOBJ(str, points()[pointi]);
                ++vertI;
 
                meshTools::writeOBJ(str, samplePoints_[pointi]);
                ++vertI;
 
                label elemi = sampleElements_[pointi];
                meshTools::writeOBJ(str, centres[elemi]);
                ++vertI;
                str << "l " << vertI-2 << ' ' << vertI-1 << ' ' << vertI << nl;
            }
        }
        else
        {
            label vertI = 0;
            forAll(sampleElements_, triI)
            {
                meshTools::writeOBJ(str, faceCentres()[triI]);
                ++vertI;
 
                label elemi = sampleElements_[triI];
                meshTools::writeOBJ(str, centres[elemi]);
                ++vertI;
                str << "l " << vertI-1 << ' ' << vertI << nl;
            }
        }
    }
 
    needsUpdate_ = false;
    return true;
}
 
 
// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
Foam::sampledMeshedSurface::sampledMeshedSurface
(
    const word& name,
    const polyMesh& mesh,
    const word& surfaceName,
    const samplingSource sampleSource
)
:
    sampledSurface(name, mesh),
    meshedSurface(),
    surfaceName_(surfaceName),
    surface_
    (
        selectReadIO(surfaceName, mesh.time()),
        dictionary::null
    ),
    sampleSource_(sampleSource),
    needsUpdate_(true),
    keepIds_(true),
    zoneIds_(),
    sampleElements_(),
    samplePoints_(),
    maxDistanceSqr_(Foam::sqr(GREAT)),
    defaultValues_()
{}
 
 
Foam::sampledMeshedSurface::sampledMeshedSurface
(
    const word& name,
    const polyMesh& mesh,
    const dictionary& dict
)
:
    sampledSurface(name, mesh, dict),
    meshedSurface(),
    surfaceName_
    (
        meshedSurface::findFile
        (
            selectReadIO(dict.get<word>("surface"), mesh.time()),
            dict
        ).name()
    ),
    surface_
    (
        selectReadIO(dict.get<word>("surface"), mesh.time()),
        dict
    ),
    sampleSource_(samplingSourceNames_.get("source", dict)),
    needsUpdate_(true),
    keepIds_(dict.getOrDefault("keepIds", true)),
    zoneIds_(),
    sampleElements_(),
    samplePoints_(),
    maxDistanceSqr_(Foam::sqr(GREAT)),
    defaultValues_(dict.subOrEmptyDict("defaultValue"))
{
    if (dict.readIfPresent("maxDistance", maxDistanceSqr_))
    {
        // Info<< "Limit to maxDistance " << maxDistanceSqr_ << nl;
        // if (defaultValues_.empty())
        // {
        //     Info<< "defaultValues = zero" << nl;
        // }
        // else
        // {
        //     defaultValues_.writeEntry(Info);
        // }
 
        maxDistanceSqr_ = Foam::sqr(maxDistanceSqr_);
    }
 
    wordRes includePatches;
    dict.readIfPresent("patches", includePatches);
    includePatches.uniq();
 
    // Could also shift this to the reader itself,
    // but not yet necessary.
 
    if (!includePatches.empty())
    {
        Info<< "Subsetting surface " << surfaceName_
            << " to patches: " << flatOutput(includePatches) << nl;
 
        const surfZoneList& zones = surface_.surfZones();
 
        const labelList zoneIndices
        (
            stringListOps::findMatching
            (
                zones,
                includePatches,
                wordRes(),
                nameOp<surfZone>()
            )
        );
 
        // Faces to subset
        bitSet includeMap(surface_.size());
 
        for (const label zonei : zoneIndices)
        {
            const surfZone& zn = zones[zonei];
            includeMap.set(zn.range());
        }
 
        if (includeMap.none())
        {
            WarningInFunction
                << "Patch selection results in an empty surface"
                << " - ignoring" << nl;
        }
        else if (!includeMap.all())
        {
            meshedSurface subSurf(surface_.subsetMesh(includeMap));
 
            if (subSurf.empty())
            {
                WarningInFunction
                    << "Bad surface subset (empty)"
                    << " - skip and hope for the best" << nl;
            }
            else
            {
                // Replace
                surface_.transfer(subSurf);
            }
        }
    }
}
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
bool Foam::sampledMeshedSurface::needsUpdate() const
{
    return needsUpdate_;
}
 
 
bool Foam::sampledMeshedSurface::expire()
{
    // already marked as expired
    if (needsUpdate_)
    {
        return false;
    }
 
    sampledSurface::clearGeom();
    meshedSurface::clear();
    zoneIds_.clear();
 
    sampleElements_.clear();
    samplePoints_.clear();
 
    needsUpdate_ = true;
    return true;
}
 
 
bool Foam::sampledMeshedSurface::update()
{
    if (!needsUpdate_)
    {
        return false;
    }
 
    // Calculate surface and mesh overlap bounding box
    treeBoundBox bb(surface_.points(), surface_.meshPoints());
 
    // Check for overlap with (global!) mesh bb
    const bool intersect = bb.intersect(mesh().bounds());
 
    if (!intersect)
    {
        // Surface and mesh do not overlap at all. Guarantee a valid
        // bounding box so we don't get any 'invalid bounding box' errors.
 
        WarningInFunction
            << "Surface " << surfaceName_
            << " does not overlap bounding box of mesh " << mesh().bounds()
            << endl;
 
        bb = treeBoundBox(mesh().bounds());
        const vector span(bb.span());
 
        bb.min() += (0.5-1e-6)*span;
        bb.max() -= (0.5-1e-6)*span;
    }
    else
    {
        // Extend a bit
        const vector span(bb.span());
        bb.min() -= 0.5*span;
        bb.max() += 0.5*span;
 
        bb.inflate(1e-6);
    }
 
    // Mesh search engine, no triangulation of faces.
    meshSearch meshSearcher(mesh(), bb, polyMesh::FACE_PLANES);
 
    return update(meshSearcher);
}
 
 
bool Foam::sampledMeshedSurface::update(const treeBoundBox& bb)
{
    if (!needsUpdate_)
    {
        return false;
    }
 
    // Mesh search engine on subset, no triangulation of faces.
    meshSearch meshSearcher(mesh(), bb, polyMesh::FACE_PLANES);
 
    return update(meshSearcher);
}
 
 
Foam::tmp<Foam::scalarField> Foam::sampledMeshedSurface::sample
(
    const interpolation<scalar>& sampler
) const
{
    return sampleOnFaces(sampler);
}
 
 
Foam::tmp<Foam::vectorField> Foam::sampledMeshedSurface::sample
(
    const interpolation<vector>& sampler
) const
{
    return sampleOnFaces(sampler);
}
 
 
Foam::tmp<Foam::sphericalTensorField> Foam::sampledMeshedSurface::sample
(
    const interpolation<sphericalTensor>& sampler
) const
{
    return sampleOnFaces(sampler);
}
 
 
Foam::tmp<Foam::symmTensorField> Foam::sampledMeshedSurface::sample
(
    const interpolation<symmTensor>& sampler
) const
{
    return sampleOnFaces(sampler);
}
 
 
Foam::tmp<Foam::tensorField> Foam::sampledMeshedSurface::sample
(
    const interpolation<tensor>& sampler
) const
{
    return sampleOnFaces(sampler);
}
 
 
Foam::tmp<Foam::scalarField> Foam::sampledMeshedSurface::interpolate
(
    const interpolation<scalar>& interpolator
) const
{
    return sampleOnPoints(interpolator);
}
 
 
Foam::tmp<Foam::vectorField> Foam::sampledMeshedSurface::interpolate
(
    const interpolation<vector>& interpolator
) const
{
    return sampleOnPoints(interpolator);
}
 
Foam::tmp<Foam::sphericalTensorField> Foam::sampledMeshedSurface::interpolate
(
    const interpolation<sphericalTensor>& interpolator
) const
{
    return sampleOnPoints(interpolator);
}
 
 
Foam::tmp<Foam::symmTensorField> Foam::sampledMeshedSurface::interpolate
(
    const interpolation<symmTensor>& interpolator
) const
{
    return sampleOnPoints(interpolator);
}
 
 
Foam::tmp<Foam::tensorField> Foam::sampledMeshedSurface::interpolate
(
    const interpolation<tensor>& interpolator
) const
{
    return sampleOnPoints(interpolator);
}
 
 
void Foam::sampledMeshedSurface::print(Ostream& os, int level) const
{
    os  << "meshedSurface: " << name() << " :"
        << " surface:" << surfaceName_;
 
    if (level)
    {
        os  << " faces:"   << faces().size()
            << " points:"  << points().size()
            << " zoneids:" << zoneIds().size();
    }
}
 
 
// ************************************************************************* //